3 genomes BUD2875 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - - HVO_3001 Hbo1516 - - - - HQ3697A

Pairwise sequence scores
Consensus score	2191	HVO_3001	Hbo1516	HQ3697A
1481	HVO_3001	2231	1091	1000
1640	Hbo1516	1091	2235	1211
1567	HQ3697A	1000	1211	2195

307 symbols
consensus       MTWEAVARKEFRDAIRSRWLQGATLFFALLIGGATALFFGVILGDAAANASNLFGIFIAL
#oth            1.111..1.1.1.11.....2.1.11121121.212111.111222222211...21221
HVO_3001        V:L:S::::D::::L:::::L:L::::::::::S::::Y::L:SG:G::SET:::LTT:P
Hbo1516         :::Q:::::::D:S::::::H:::V::V:FV:::AL:A::L:YP:RFKD::::::F:LD:
HQ3697A         :::::::T:::::::::::::::::VLTI:LA:T:GV:::::::SE:REI::::::::N:

consensus       -GIFNFSFAGLLGLILGFIALSTAYGSITDERESGTIKLLLSLPNSRRDVVIGKLLGRTA
#oth            1.2.11.12.11111.11...1.21..111..11.11..1.....1.1.112..11..11
HVO_3001        G:L::::Y::M::FV:AL:::V::H::LI::::::::::::::::::::::F:::V:::L
Hbo1516         ::::SL::P:::A::::::::::S:::::E:::T::M::S:::::::::LIV::::::G:
HQ3697A         ::V:::::T::I:::::::::::T::::::::A::S:::::::::D:Q::::::F:::::

consensus       VVIVSLLAGFIAAFMAMIATGTQIQLGSFAPQIALTVLLAIAFVSIGLGISAGADSNREA
#oth            ..2112.21.221121121..122221112121..11..121.11..111..21111.1.
HVO_3001        ::L::M:V::VV:LF::LF::G:VMFV:Y:G:V::SG:::T::::::VWL::TSA:Q:Q:
Hbo1516         ::::A:::::L:::V::V::::G:SY:::V:M::::::::F:::::::::::V::T::::
HQ3697A         ::VA:V:IA::IT::IL:::::SL:::M:L:H:::::::G:V:AA:::::::::::::::

consensus       TLATLGLYLIFAILWGAVAEGIPRLLNAVAEQAGGGALEAPTRVQIALFLKYLNPLRAYE
#oth            112121..1..12..221.2.1.11112121.21221.2221212121111......2..
HVO_3001        LFG:V:::F:::V::ST::T:V:::V:W:V::L:LT::T::QI::MR::I::::::::::
Hbo1516         :::::::::::G:::KPI:::::K:::Y::::::M::::NV:::K:G::::::::::T::
HQ3697A         ::SAMA::::::L::::::S::::I:L:ATN:VN:LS:SET:QAT::IA:S::::::L::

consensus       TLAAQLYGGAAAARLLGAGLAERLLIEPQFEQSIPPYFSGAAILAILIAWIVVPIIVGYR
#oth            ..2.11.221121..22.2121112111212112.1.11.212111121.111.221..2
HVO_3001        ::V:E:::P:V::::FK:::::::T::ST:S::L:F::T:PF:::::V::::::PLL:::
Hbo1516         ::S::V:Y:::RG:::::TTG:T:V:::VLK:G::::L::::MM:::L::::::VV:::Y
HQ3697A         :::::::SSP:T:::VT:S:QQ:A:LA::::S:V::::::W:L:VVF:L:VIL::::::S

consensus       AFEKADL
#oth            2.112..
HVO_3001        :::::::
Hbo1516         V:Q:Q::
HQ3697A         I::RR::