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3 genomes BUD2892 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2948

rrnAC3345

- -

Hmu2886

- - -

HQ1964A

Pairwise sequence scores
Consensus score1156 rrnAC3345 HQ1964A rrnAC2948 Hmu2886
829rrnAC3345 1358 742 516 521
754HQ1964A 742 1145 470 425
764rrnAC2948 516 470 1156 628
724Hmu2886 521 425 628 1181

178 symbols
consensus       -------------------------MMLEPGADAPTISATNQHGEAVQPDFNAPTVLYFY
#oth            111111111111111111111111121.22.311.2.2.2..21131312.331..1.1.
rrnAC3345       MVVQITLAGHAAATQRRVGVPGQHRI::::::P::D:::Q::F::T:S:::D::::::::
HQ1964A         :::::::::::::::::::::::::-::AA:DP::::T:::::D:SITIE::T:::M:::
rrnAC2948       ::::::::::::::::::::::::::V::::T:V:::R::::::D::::N:EQ:::::::
Hmu2886         ::::::::::::::::::::::::::V:DT:S:::A:::R::W::R:E:::GGA::::C:

consensus       PADDTGGCTIEARDFQEHLPRFRDAGINVYGVSMDDVASHREFAEAEDIAFDLLADPDGE
#oth            .3.112.1.11121.2222231113.13.....1.2.32.22...3211311.....1.2
rrnAC3345       :E:F:::::::::::::Q::Q::EG::T::::::::::T:D::::E:GLLY::::::::T
HQ1964A         :K:F::::::::N:::SV::E::EV::::::::::T:K::A::::K:::I:N::::::::
rrnAC2948       :::::P:::T:TEQ:E::AQ::E:T:VS:::::T:G:E:::D::::N::S:::::::E:R
Hmu2886         :R::AA:W:TQ::Q:DD:YDTY:::::P:::::T:::DG::A:::DH:L:::::::::::

consensus       IAEAFGLDLDDGRIDRRTFVIAAGRVVSVYDP--VDPDGHAAAVLRDLRNNGLV-RAE
#oth            212..112132.132.1.111.3211221.122222.1...33.12.22232211311
rrnAC3345       V:::::::TSG::T::::::L:D:EIK:::::DIS::::::E:::::V::EFV-:QGG
HQ1964A         ::S:::::TTS:Y::::::TL:ESE:I:::::AMA::S:::RK::T:M:::YG-::GG
rrnAC2948       LC:::DVP:V:::SQ:T:Y:::RE:::A::ER:::G::::::S:FE::VDT::::S::
Hmu2886         ::D:::VA:::::VA:T::::::::::GL:EG:::R:::::LD:::::AEL:::DP::