3 genomes BUD2895 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2481 - - Hmu2431 - - - HQ1458A

Pairwise sequence scores
Consensus score	654	HQ1458A	rrnAC2481	Hmu2431
318	HQ1458A	2167	205	228
466	rrnAC2481	205	642	440
550	Hmu2431	228	440	634

303 symbols
consensus       MSNDLADEQQDRAQQLLNGIEFLTGEDPSAGSFLLVVGGVTCVFIAAFQFALPEPISTLL
#oth            1121222..122222212121111.11.1111...1..2..11...2.1.21121.1121
HQ1458A         ----MSS:::GP::::MD-----E:AG:NFAA:::T:::::VL:::I:I::F:GT:GRFF
rrnAC2481       ::E:VVE:::PQTSGF:::L::::::::::::::::::M:::::::G:::L:NP::::::
Hmu2431         :::::::::P::S---:S::::::::::::::::::::I:::::::::::T:::::::V:

consensus       TALVVVIAVISFIMGAVLDALGYF------------------------------------
#oth            121.11221.1121.11..2.1..111111111111111111111111111111111111
HQ1458A         A:A::TVTI:TLML:M:::L::::GSRASILVESEEEQTAGGVPDSVSRKPNKPLPKQIN
rrnAC2481       :G::L::S:::::::::::M:D::::::::::::::::::::::::::::::::::::::
Hmu2431         :S::::L:::::L:::I:::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
HQ1458A         FDSEIKTLQEYFDGELPSQMNSFLTEYEQLKKSTSNRKVTAGSLRAALNPVQTIVDDSEM
rrnAC2481       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2431         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
HQ1458A         EELVEDMGDRLFRYIKSDPVDNIVVSEYAFYQDGNQKSVEALQAEKARIRATVHNQGEGA
rrnAC2481       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2431         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       -----------------------------------------------------ATPDSE-
#oth            1111111111111111111111111111111111111111111111111111121.1221
HQ1458A         KAEVAVQFKNTDDVPVKTAYLPVGNLVPEGRKDLDTNVYIPSLATEADVFVIR::::T:V
rrnAC2481       :::::::::::::::::::::::::::::::::::::::::::::::::::::E::---:
Hmu2431         :::::::::::::::::::::::::::::::::::::::::::::::::::::DV:::K:

consensus       ---
#oth            111
HQ1458A         LTM
rrnAC2481       :::
Hmu2431         :::