3 genomes BUD2900 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0181 - - Hmu0572 - - - HQ3224A

Pairwise sequence scores
Consensus score	907	Hmu0572	rrnB0181	HQ3224A
383	Hmu0572	547	358	358
854	rrnB0181	358	1460	788
841	HQ3224A	358	788	914

186 symbols
consensus       MLPITDFLSCTDPLDEFESLSYHQTRHAKTYVTGLAAARSKTVTGIAREVLPAGSDRALN
#oth            ...1.1.....1.11.1111.11.11.........1.11111.1..1111...1.1.1..
Hmu0572         :::L:S:::::A:I::L:CF:TR:KY:::::::::V::SN:::D::STHM:::K:E::::
rrnB0181        :::::::::::::::::D::::::::::::::::::::::R::::::::::::::::T::
HQ3224A         ::::::::::::::G::::::::::::::::::::::G:::I::::::::::::::::::

consensus       KFLTEYDWDEDQLNHERLEELQKHGENRWSQDGYIVIDDSVFQRTGK-------------
#oth            ..1........1111111121111112111111111111111111111111111111111
Hmu0572         :::::::::::------------------------------------:::::::::::::
rrnB0181        ::P:::::::::::::::::::::::T::::::::::::::::::::ELPGAGKFYDHTE
HQ3224A         :::::::::::::::::::G::::::::::::::::::::::::::::::::::::::::

consensus       -------------------------------------DADETNFDLN-------------
#oth            111111111111111111111111111111111111112121222221111111111111
Hmu0572         :::::::::::::::::::::::::::::::::::::----------:::::::::::::
rrnB0181        GEPVWGQDLVYSFYTDDKTSYPLVFRQYKKADDEDQD:::::KY::SREMVTELEEEVGV
HQ3224A         ::::::::::::::::::::::::::::::::::::::S:S:::WV::::::::::::::

consensus       ------
#oth            111111
Hmu0572         ::::::
rrnB0181        PADGTV
HQ3224A         ::::::