3 genomes BUD2901 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1868 - - Hmu0840 - - - HQ1174A

Pairwise sequence scores
Consensus score	2070	HQ1174A	rrnAC1868	Hmu0840
885	HQ1174A	2223	574	574
1546	rrnAC1868	574	2083	1228
1615	Hmu0840	574	1228	2058

290 symbols
consensus       -MSERVLGVDFSGAARAGDALWLTEAR----ETDDGLRIERCYRAAD--EWGADREAAHA
#oth            1112111.1.....12..121111111111121111.2112.11121111112..11111
HQ1174A         MLAHTIY::::::::::::NIY:ARG:VPTASS:ET:H::T:TP:PTLLDTT:::D:VLS
rrnAC1868       ::::::::A::::::S::::::V:::I::::P:::::T:Q::::GT::::::R:::::::
Hmu0840         :::S::::::::::SD::RS:::::::::::::G::::V:D:::::::::::P:::D:::

consensus       GLRDRITA---DDVGSV--GLDFPFSLPQALLDAQCD-GDWAGFVDWL-PGDGPTDPDEF
#oth            ..1211121112.112.11.1..1..1.111111211112.21112.1121111...221
HQ1174A         :::EF:ATRPTS:T:::AF:C::A::I:MVHIA:VD:VT::QS:LQ:F::::-M:::ST:
rrnAC1868       ::L::::D:::::::T::::::::::::::::::::G::T:D::::::AS:S:::::GSL
Hmu0840         :::S:L:::::F::--:::::::::::::::::EH::::E:::L:E:::TL:::::::::

consensus       ASACRDTAAAATGDRT-SLRRETDLRRGALCPYDRRIQSQTFYGIRDVLAGLADDNDIAV
#oth            1121121.222112111211.1..2.11..1..2222111....1.1..12.2112221.
HQ1174A         ::WAG:I:::TETK:::YIQ:L::T:V:::S::HFF::::::::::::::P:VKT:S:R:
rrnAC1868       SE:::H::EM:::S:D:-::::::F::::::::TN:TR:M::::V::::GK:R::EET::
Hmu0840         ::T::S::REH:::G:A::::::::::A:::::::MV:Y:::::::N::::::::P:V::

consensus       APMQDGDAAT-RVVEVYPAATFGWLGLYREGYKSTDD----RRQRRAANIDAREACSVTL
#oth            2..122122112.1.1.....1111.1111...122.11111.11122111121111112
HQ1174A         R:::SPTSDIPW:::A:::::LDRF::PDD:::::S:DAYN:::MIIEE::::DDVTL:P
rrnAC1868       V::EGW::E::L:A::::::::::::C::::::NV::::::P::::E:::A:V::::::V
Hmu0840         :::::::P::::::::::::::::::::::::::--:::::::D:::T:V:GI:::::D:

consensus       GAHRDAYER-NHDALDSLAAVVSAGRVA-DGARRPAAGP---QCEGCIYV
#oth            122121122121....111.1.11111.111212.221111112..2.11
HQ1174A         E:KAT:LTDPDG::::AVI:A:ATFH::R::ITI:SSADDRW::::W:VS
rrnAC1868       :D:::T:LG:::::::::::::::::L::::::P:::::::::S::::::
Hmu0840         :GF:E:::::H::::::::::::::::::ENG:::LH:::::RE::H:::