3 genomes BUD2902 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1636 - - Hmu0462 - - - HQ1791A

Pairwise sequence scores
Consensus score	1721	HQ1791A	rrnAC1636	Hmu0462
1106	HQ1791A	1884	866	768
1414	rrnAC1636	866	1688	1037
1230	Hmu0462	768	1037	1762

248 symbols
consensus       MDERSGRFRVYRVVDAVPHINLFDTDATRLYTVYQSGYGERQPAVDDLRTGDLIEATIAG
#oth            .11.111.......21...1..111.211...1.11..111.111.2.1....1.1122.
HQ1791A         :SQ:::::::::::PS:::L::QAV:ELT:::::E:::ETI:ES::T:::::::::::S:
rrnAC1636       ::::T:V::::::::::::::::::::::::::::::::::::::::::::::V:::LG:
Hmu0462         :::::S::::::::E:::::::::::G:::::T::Q::::::::I:G:E::::::GRV::

consensus       DPADDEEAWRLRAFDRIDGVAMDFAVDAELPAVAADCWEPGQRRPACAVLE---------
#oth            ..2.21...2.221..111.2.1.111111.21.222.121222.122111111111111
HQ1791A         :::::A:::::T:I:::G::R:::::N:T:::::DT:::S::SE:R:VT:TNQEDTQSNS
rrnAC1636       ::D:S::::S:LS:::R:R:::::V::::V:E::::L::::LE:::S:::::::::::::
Hmu0462         ::T:E::::T::E:::::::D:G::T:V:::QI:RET:DTQS:G::HS:I::::::::::

consensus       ------------ADGQPVGECCVQPRAPLPGGAFVPSVLTGLLPMESLLTEVPGADDPAT
#oth            1111111111112112.111.2....11..1.2.1.11.1.11.1.12.12111211.21
HQ1791A         APDGGFEPSTDTDSAP:I:A:::::::G::D:::I:NI:::T::L::V:QS:::T::::V
rrnAC1636       ::::::::::::E::K::A::F::::::::::T:::::::::V::::::::L::IG::P:
Hmu0462         :::::::::::::::::::::W::::S:::::S::::::A::::::EK::T:VS::A:T:

consensus       DAIFIDPDPPDADSYSRPYGVALLFTARADDLRERFRERYDCP----ADADNRPEYDPY-
#oth            1.2.1..1111.11112.1..21..122121112111111.111111212.2..11...1
HQ1791A         T:L::::AR:S::N:EI:F::V::::QSDT:::K::YQQ::::TEPDS:I:T::SF::::
rrnAC1636       ::::::::::::::::::::::V::::G::::LTE::::::LS:::::::::::::::::
Hmu0462         ::V:L::::V::A:F:Q::::L:::SE::GAR:::Y:::F:::::::RGT:S:::::::D

consensus       ------GL
#oth            11111112
HQ1791A         ::::::AM
rrnAC1636       ::::::::
Hmu0462         PSTGGF:P