3 genomes BUD2915 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0576 - - - Hut0459 - - HQ2117A

Pairwise sequence scores
Consensus score	3713	Hut0459	rrnAC0576	HQ2117A
2823	Hut0459	5357	2262	2271
3034	rrnAC0576	2262	3678	2478
2977	HQ2117A	2271	2478	3693

717 symbols
consensus       --MDDRNTTRRRILLGIGAGATVGLAGCSGGDDD-------GDAGPD-TETDSGMDEPMN
#oth            11221221....2.112.112...1...11121211111111111111.1..11122122
Hut0459         :::T::TQ::::L::SM::AT::::::::D:::ETTMDDAMT::::EP:::::::-----
rrnAC0576       ::-MSSD:::::::::::T:V:::I::::::GNG::::::::AEE:::::::::::T::E
HQ2117A         MSS::P::::::V:F:V:::::::::::L:NS:::::::::::::T:::D::TPTE::T:

consensus       TETDEDTETEEDPGTAAVRVAHMSPNAPNVDVYLNGDAVLEDVPFGAVSQYLDVPAGERE
#oth            .11.221211211.1121....1........1.12.21...........1..2...1112
Hut0459         ::S:P:M-:AS:::EGRL:::::::::::::I::::E:::::::::::::::S:::QDHT
rrnAC0576       ::::TQ::A:T:::::::::::::::::::::::E::::::::::::::::::::::::S
HQ2117A         :P:::E:P:::PE:::N:::::L::::::::::VD:SV:::::::::::E::E:::::::

consensus       VEITAAGDPDTSVFSGAVAVEADTDYTVAATGEIGDDADQAFEPLVLEDDNSEPGDDTAR
#oth            11..1..11..1..1.2.2.1.1.1..1..1..2..1..12.1.......1.11.2.1..
Hut0459         :T::P::S:::E::::S:T:A:E::::::::::V:::::EP:A:::::::T::V:::E::
rrnAC0576       ::::::::::::::::P:::::::A::I::V:::::::::::::::::::::D::G::::
HQ2117A         I:::::::A:::::A:::P::::::::::::::L::M:::T::::::::::::::S::::

consensus       IRAVHASPDAPAVDVTAASNGDALFDGVEYGGSGYVEVPAGEYTLEIRGDTDANDGDVAA
#oth            2.2........11.1.2.11111.1.1.11.1...11.11.1..111....121....1.
Hut0459         L:V:::::::::::::::GGDVV:::::SF:::::TT:G:::::V:::::::E:::::::
rrnAC0576       V:L:::::::::::::L:::::::Y::::::::::::::S:D:::QV::::ES:::::::
HQ2117A         :::::::::::TI:I:T:::::::::A::::E:::::::::::::::::::::S::::V:

consensus       EFDVSLAGGEVYTAFAAGYLTPDDEPADTPFDLLVTQDTGGGAAET-PEPEPGNVRVAHM
#oth            1...1.2..11.........1...1.111......11111111221121221111..1..
Hut0459         D:::T:E:::T::::::::::::::::M::::::::TPS:R:::PE::::GD:QL:::::
rrnAC0576       ::::::S:::::::::::::::::D:::A::::::::::::S:T::ET:S::A:::::::
HQ2117A         :::::::::Q::::::::::S:::::G::::::::S:::N::MMS::---S::::::S::

consensus       SPNAPNVDVYVDDSVVLEDVPFGAVSDYLEVPAGAHTVEITAAGDPDTSVFNGDVTVEAD
#oth            ..........112111.......11.1..111.121..1..11.1.1.1..2.2.1.111
Hut0459         ::::::::::LN:E:A::::::::::Q::S:::TE:::T::PT:S:::E::::S:::A::
rrnAC0576       ::::::::::::G:A::::::::::::::::::::R:::::::::::::::E::::::GG
HQ2117A         ::::::::::::E::::::::::TT:::::LA::D:::::::::::E::::S:T:P::::

consensus       TAYTVAAAGEIGDDADDPFA----------------------------------------
#oth            11..11.1..2..12122.21111111111111111111111111111111111111111
Hut0459         :::::::T::V:::::E:::PLLLEDDTSDVADDEARLTVVHASPDAPAVDVTAGDGDVV
rrnAC0576       Q:::::::::::::TG:S:Q::::::::::::::::::::::::::::::::::::::::
HQ2117A         :D::IV::::L::MV:QT:E::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut0459         LFDGVPFGAGGTTTVDAGEYTVEIRGDTDGNDGDIAAEFDVTLEGGQSYTAFAGGYLTPD
rrnAC0576       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ2117A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut0459         DEPAATPFNLLVTTPSGRGAAPEPAPAEGRLRVAHLSPNAPNVDVYLNGDVALGDVPFGA
rrnAC0576       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ2117A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       --------------------------------------------------------PLVL
#oth            11111111111111111111111111111111111111111111111111111111..1.
Hut0459         VSTYLSVPAQEHDVTITPAGSPDTEVFSGAVTVAEDTDYTVAATGEIGEDADEPFA::::
rrnAC0576       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ2117A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::I:

consensus       EDDNSAPANDTARLRAVHASPDAPAVDVTAASGGDVLFDGVDFRGSGYTEVPAGDYTIQI
#oth            1.111212211..1.2..2.....1..1.1212111..1112.2111111.1.11..211
Hut0459         :::::DV:D:E::::V:::::::::::::::G:DV::::::P:G:::::T:G:::::VE:
rrnAC0576       A:NLT::S:G:::::L::L:::::Q::::VG:S::::::AA:::EFDSV:::::E::::V
HQ2117A         :::::S:GE::::V::::V::::::::I::S:T::T::N::G:S:::::::::N:::L::

consensus       RGDTDDNDGDVVADFDVSLAGGTVYTAFAAGYLTPDDEPADTPFDLIVAQDTSEM--
#oth            ..1.22...1.1.11.1..2.111.........1.....1.11...2.1..112.11
Hut0459         :::::T:::::A:::::::D::::::::::::::::::::::::::L::::N:-:::
rrnAC0576       ::A:P::::::::EY:L::::E:G::::::::::::::::::::::::::::GG:::
HQ2117A         ::::ES:::E:::::::::N::Q::::::::::S:::::Q:VA:::F:T::::::SN