3 genomes BUD2920 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3241 - - - Hut1801 - - HQ1087A

Pairwise sequence scores
Consensus score	1194	HQ1087A	rrnAC3241	Hut1801
580	HQ1087A	1172	293	305
684	rrnAC3241	293	1113	438
752	Hut1801	305	438	1551

204 symbols
consensus       -GNSGLWIR-----------------------------------------ALVICLAGLL
#oth            1221222211111111111111111111111111111111111111111121.21.222.
HQ1087A         :M::T::::::::::::::::::::::::::::::::::::::::::::::I:F::LLS:
rrnAC3241       :--------:::::::::::::::::::::::::::::::::::::::::M::L::T--:
Hut1801         M:S::SYV:RCWLERRSILAVPKVPIERIGTKTYITSHSDRRPVRQWQRGL:::G:::::

consensus       NG-MCIHYAAHEERRSPYPDAAEIAADYAEHIGDQLNLFGTVTAVDADAEEATIRAAADG
#oth            2.11211122211221...2.21222212211.21122111.121221222211122222
HQ1087A         ::V:M:D::H:A::Q::::T:E:VKN::QT:::::V:FWSQ:SI:QE:TVGV:Y------
rrnAC3241       G::L:::AELT:DE::::::::DLS:G:ESYV:Q::MV:::::--ETNEG:MR:::ES::
Hut1801         L:::GV::G:V::DHW:::E:D:::GQP:::::EE:F:::::::::::::T::::V::SP

consensus       EAIPLRVQEFDRAVRSGGTVQVYGELNAAQTIAAERVVVVNSSRGAELYKYGVSVIGALG
#oth            2212121122121121.12...1.1.222112211.11.111122112.1111.11.112
HQ1087A         -GQ::YI:TS:LS::::DW:::::::::K:ELVV::I::--:PQSNR::MIA:::G:V:L
rrnAC3241       T::T:::T:TRT::EP::V:::::T:EP:::::::::E::::::W::F::::A:A:::::
Hut1801         :S:SIT::S::::AQ:::::::L:::TDER:VD:D::::::D:G:::W::::::::::IV

consensus       ALIAFVRYWRIDTDAWIIEAR-DG
#oth            2.12.1.1.1..122.2222.1.1
HQ1087A         :::M:::H:K:::KR:::VP:::P
rrnAC3241       F:LL::::::::RE::TL::::::
Hut1801         V::::F::::::::S:SFGV:H::