3 genomes BUD2929 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - - - - Hmu2085 Hut1806 - - HQ3501A

Pairwise sequence scores
Consensus score	616	Hmu2085	Hut1806	HQ3501A
318	Hmu2085	598	289	296
559	Hut1806	289	616	548
577	HQ3501A	296	548	1034

138 symbols
consensus       --------------------------------------------------------MATA
#oth            11111111111111111111111111111111111111111111111111111111....
Hmu2085         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hut1806         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ3501A         MRPVRRTSRSGLSHPERAGRTVPQTVLGGIHGRSGLVLGLRLTQRLRRVNANVDVT::::

consensus       DEQIRVSDRVKRELNRLRREGESYNDVLERVLDEDREGDFYDGFGRWSDEEAERVREARR
#oth            .......1.1.11.211...1.........11112221..1....11.1.11111.12.1
Hmu2085         :::::::E:I:ER:EHR:::::::::::::LIADTT:S::D::::VL:E:QG:WI:TK:A
Hut1806         ::::::::::::::D:::::N:::::::::::::EKL:::::::::::::::D:::::::
HQ3501A         ::::::::::::::::::::::::::::::::::::V::::::::::::::::::::G::

consensus       KSKEKRKQRARERGADAA
#oth            .1111.11.211112121
Hmu2085         :ARDE:AD::ERL:DR--
Hut1806         :::::::::L::::::T:
HQ3501A         :::::::::M:::AE:::