3 genomes BUD2932 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1402 - - - - hla2575 - HQ3648A

Pairwise sequence scores
Consensus score	2671	HQ3648A	rrnAC1402	hla2575
2187	HQ3648A	2667	1958	1955
2396	rrnAC1402	1958	2682	2107
2285	hla2575	1955	2107	2662

348 symbols
consensus       -MRAARLHEYTDDMSDGLSIDDVDRPQVARGDDVIVEVEGAGWCQTDNHIIEGMWEDYVP
#oth            1.2.....1..1..121.1..21.1.212221.1....1................12..1
HQ3648A         ::D:::::N:::::DSA::::SI:::T:E:S::I::::A::::::::::::::::T:::D
rrnAC1402       M::::::::::H::::::::::::A::::S::::::::::::::::::::::::::Q:::
hla2575         ::Q::::::::::::E::A::E::::HATGPS::::::::::::::::::::::::E:::

consensus       QDLPMTLGHENAGTVIETGDDVDIVSAGDQVICHPVQTCGTCRPCRLGETMYCENDAFNG
#oth            .1.........1.1.111..1.11112..21.....1......1..1..1.....21.1.
HQ3648A         :::::::::::T:E::AV::E:QTIDV::TI:::::M::::::Q:::::D:::::LS:P:
rrnAC1402       ::::::::::::::::::::::::::::::::::::::::::::::Q:::::::::::::
hla2575         :T:::::::::::::V::::::::::E::P:::::::::::::::::::::::::S::::

consensus       LTTDGGFAEYLRTSERSVIPLPDGVDPADIAPHADAGITAYHAVKKAVADLNPGDHAVVI
#oth            ........11.2.11..1....2....2...............1....22.....2.1..
HQ3648A         :::::::::::::::::A:::::::::V::::::::::::::::::::DE:::::P:I::
rrnAC1402       ::::::::DQ:L:GD:::::::E::::::::::::::::::::A::::NG:::::T::::
hla2575         :::::::::::H::::::::::S::::I::::::::::::::::::::::::::::::::

consensus       GVGGLGHIGLQCLDAMSAADIIAVDIKESARDLAADLGARYTIDPESEDVAAEIAAITDG
#oth            .1..............1..112.1.1.11.1...211..21111.211..22122211..
HQ3648A         :::::::::::::::::::::::L::::A:::::::::::::V::T::::S:A:DDL:::
rrnAC1402       :I::::::::::::::C:::LV:::::Q::::::D::::H:::::::::::S:VE::S::
hla2575         :::::::::::::::::::R:T:::L::::L:::EGY::DHL:N:SDD::RE:L:G::::

consensus       HGAAQVLDFVGADETTAYAPDICAAGGDHHIIGYGGHIHEPAQALVNGEFAYRGNIVGQY
#oth            2..1..1......2..11...12.1......1.....1...1....11..112.1...1.
HQ3648A         :::E::I::::::V::G::::VI:P::::::V:::::::::S::::DA::::::T:::::
rrnAC1402       V::::::::::::::::L::::::::::::::::::::::::::::::::::Q:::::::
hla2575         T::::::::::::I::::::::T::::::::::::::V::::::::::::SFV:::::R:

consensus       TELQELVALVERGAVDLHTSRYDLGDVNTVAEQLEHGEIDGRAVITP-
#oth            1......1..11.2.1.1.11....2..11.12..11..1.......1
HQ3648A         :::::::R:::::D:E:R:::::::S::AA:::::::::E:::::::N
rrnAC1402       ::::::::::D::::::::TQ::::::::::QM::DR:::::::::::
hla2575         A::::::::::Q:E:::::::::::E::::::K:::::::::::::::