3 genomes BUD2934 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0006 - - - - hla1379 - HQ2191A

Pairwise sequence scores
Consensus score	2252	HQ2191A	hla1379	rrnB0006
1891	HQ2191A	2249	1723	1680
1992	hla1379	1723	2255	1755
1976	rrnB0006	1680	1755	2263

306 symbols
consensus       MSRACISF-RDGHVYEFAPNMEPVYTAADGESLTIETIDSLNKAIQTDDDLLDAIPEEVN
#oth            .1.222.212...1...1.2.1.1.1.1....1.1.......111.111.11.1..1...
HQ2191A         :T:KV::Y:K:::::::::::::I:::K::::I:F:::::::::V:S:S::M::::::::
hla1379         ::::LT:S:::::::::::T:::::E::::::::::::::::G:::::::R:::::::::
rrnB0006        :::R:V::DE:::I:::S:E:D:::::::::::::::::::::T:::G:::::S::D:::

consensus       AATGPIAVEGAEPGDVLAVEIEDVRVTEDQGRVITAPDFGLLQDDEEIEHPATRITEVD-
#oth            .....11....2...1.1....1..11.21...2.1.2......111.......1..111
HQ2191A         :::::V:::::T:::::K:::::::LN:E::::::::E::::::H:D:::::::V::IT:
hla1379         :::::::::::S:::::::::::::::::R:::L:::G:::::::P:::::::::::::A
rrnB0006        ::::::E::::::::I::::::A:::::G::::V:T::::::::::::::::::::::::

consensus       -GASEQIDFDGHEVPIEPIIGTIGVATAEETITTLTPHDHGGNLDTTDMTTGTTAYFPVF
#oth            11211212.21211..1.2........1.1111..1.11...........1..1......
HQ2191A         :KG::SLL:KDL::::N::::::::::S:::::::I::N::::::::::::::I::::::
hla1379         E::::::::E:ID:::::V::::::::::GSVS::::D::::::::::::::::::::::
rrnB0006        ::--DT:E:::::I::::M:::::::::::::::::::::::::::::::G:::::::::

consensus       QEGAMLAMGDSKAAMADGEMCGTGAEIGTEIDVTVSVIEDPAVDLDRPLVDTGDAIKTIA
#oth            .1...........................1....1...2.1212.1..1....112.1..
HQ2191A         :::::::::::::::::::::::::::::D::::::::K:A::::E:::::::::W::::
hla1379         ::::::::::::::::::::::::::::::::::L::::::EIS:::::::::::V::::
rrnB0006        :D::::::::::::::::::::::::::::::::::::S::G:G::::I::::EN::S::

consensus       SAETMEEAVELANRDIIRLLAAEHDMSRTEAYLFSSLVGGLEISQVVDPLVTARNSVPSE
#oth            ..1...1..11..1.222..121.12.2.1...................1..1..11.1.
HQ2191A         ::::::D:::M::E:L:K:::L:::Y:L:D::::::::::::::::::::::::::::::
hla1379         :::::::::::::::VV::::H::GF:::::::::::::::::::::::Q:::::A::::
rrnB0006        ::D::::::K::::::LD::Q:D::::K::::::::::::::::::::::::V:::I:A:

consensus       YLSDPF
#oth            11.2.1
HQ2191A         :F::::
hla1379         :::V:Y
rrnB0006        H::H::