3 genomes BUD2954 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - pNG7121 - - - - - NP2002A HQ3618A

Pairwise sequence scores
Consensus score	2146	NP2002A	HQ3618A	pNG7121
1598	NP2002A	2188	1193	1278
1602	HQ3618A	1193	2208	1253
1669	pNG7121	1278	1253	2257

330 symbols
consensus       ----------KALDPIGNGAALLLQFLDSFAFIVLAAAGLAVIFGMMGVINLAHGEFILI
#oth            111111111122122222122111.11..1..11..12..11...1............12
NP2002A         ::::::::::MP:S:LYD:::::F::::::::L:::TV:::::::::::::::::::::V
HQ3618A         MIPLFIADVL::::S::VPVSQ:::MA::I:::A:::I::T:::::::::::::::::MM
pNG7121         ::::::::::-----MV::IN:A::::::::::::::::::I:::I::::::::::::::

consensus       GAYGTTLAINALGLPLPVAMILGAVGTAAFGIIVERLII------------------QRL
#oth            .1.211.222221...1...22.212.22..111..21111111111111111111122.
NP2002A         :I:::A:TYH:-::::::::VS:V:M:VI::::::::VV:::::::::::::::::::H:
HQ3618A         :::I:::S::VVS:::::::::::L::::::A::::T::::::::::::::::::::K::
pNG7121         :::TA:::VTQ:::::V:::LV:G:V:GL:::LT::V::SGAWPNWVSQRTLGRDIIEP:

consensus       YNRLLDSMVATFGLALILTQGARIRFGNSLDSIATPFGAVAYGAYTYSTYR-VLLALVAI
#oth            .2..1...11.1..2.111.121.2..1.111.2..1.21211211111..112.21111
NP2002A         :D:::::::::W::::VVA:LLL:T::S:::::S::M:N::::P::SG:::S:F:P:::L
HQ3618A         :G::::::IV::::G::::::T::I:::::R::G::::Q:P--G::::G::::::L:A::
pNG7121         ::::A:::::::::S::::::::::::::I:Q:::::::IS:::FS::::::IV::G:S:

consensus       GVLGALYLLFTRTEFGVRARATIQDPETARAMGVDTDRMYMITFAIGSGLAGLTGALYAP
#oth            11.222.21....1..11.....1.1...1...11.....22..11..1........1..
NP2002A         A::VG::V:::::::::K:::::E:::::::::I::::::VT:::L::::::::::::::
HQ3618A         ::::SV::A:::::::::::::::::::::::::::::::T:::::::::::::::::::
pNG7121         :L:L:T:Y:::::D::M::::::::K:::Q::::N::::::L::G:::A::::::::F::

consensus       AI-AIQPDRGDQFLVEAFVAVVVGGPSVVLGTALAGGILGAINAVFSNLYGTFIGRIALL
#oth            211212.22.22....1..1..1..1..11..1111.2..211.1..111.1.2.21.1.
NP2002A         ::G::T::::SI:::::::::::::::::I::LS:S:L::FV:::::FQL:::V:LM:M:
HQ3618A         SA:T:V:GM:QS::::S::T::T::S::L:::::::::::T::::::::::N:F:Q::::
pNG7121         V::SM::TL:::::::::::::::::::::::::S::V::::L:T:::::::::::::::

consensus       IAAIIALRLLPDGITGLIEQLRDRRREDQ-
#oth            22.1.11.2..1.11.21112.21121211
NP2002A         :V::::::V:::::S:Y:::W:Q:::A:::
HQ3618A         MT:::II::::G:L:::ANTV::KLG:Q:S
pNG7121         V::L::::F:::::::F:::::K::Q:SD: