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3 genomes BUD2975 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
- - - - - -

hla1349

NP3236A

HQ2845A

HQ2846A

Pairwise sequence scores
Consensus score1393 HQ2845A HQ2846A hla1349 NP3236A
943HQ2845A 1399 726 644 472
840HQ2846A 726 1336 562 377
999hla1349 644 562 1424 646
720NP3236A 472 377 646 1704 

251 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
HQ2845A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HQ2846A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla1349         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP3236A         MRPLRPAVLRDALASPCGAVRPAQYRFYWTILKTDKDGWSRPAAAAYSKSVIRPPVLSTA

consensus       MSSLAIEYASHATVDEIVDRLTYCAESVSRAFDRWDEQYVRGPGLYFAVAADRGFGAYAD
#oth            122232222111212.222112112.22.23..3.111213..1...2.3.1221.2...
HQ2845A         :::DDPLQ:T:::::::RH:VMAV:::L:LS:::::::::S::S:::I:L::VN::::::
HQ2846A         ------MK::F::T::LI:L:::VV:D:::R::N::S::::::S:::V:::GAR::G:::
hla1349         ::G:::::GT:DR:R:::::::::::H::V:::G:::PH:K::::::::V::::Y:::::
NP3236A         :P::E:::H::DS:T:V:A::Q::L::I::T::E:ESPRAE::::::::I::::Y:D:::

consensus       PLGDNRWPRETCRTVFDE-DAFVDAAENVAFDRDGAIVVTVDGTIQEQMVRIRNPAAAAG
#oth            .1.211..3211311322222222.22312212..111122..211211..1.3233333
HQ2845A         :::A:V::V::::VATNSIES::T::R::::K::::::I:A::::::::::::S:S::EV
HQ2846A         :::V::::ID:AHV:SRDL:PVIA:::EI:::C:::VI::T:::F::R:::::PADGLDI
hla1349         :M:::::::KS:T::::::::::::V:T:SVK:::G:::A:::E:EA::::F:DLGTRS:
NP3236A         :M::Y:::T:::P::Y:::A:LL::SWQ:GM:A:::V::G:::H:EP:L::F::::FV:T

consensus       E----DDIAYEDWMGARHLSAIEV----STRDGVLAAVTLSEENGRVSVFKNGDFNDYQR
#oth            121121112.22..121.2.13111111.213212121.1.1121111212213232231
HQ2845A         :R::R:E:::A::::TK::::V:::::::::T:::F:::V::::::::I::::Q::::::
HQ2846A         G::::-::E:P:::S:K::::L:::::::SL:AI:::::::::::::::::D:E:K::K:
hla1349         :STLV::VS::P:::S::M::::T:::::V:PE:V:T::::::T::::::R:::AESME:
NP3236A         :::::-E::::N::::::V:YPR:KSWA:::S::S:RA:V:S------------------

consensus       NELGGRWRVE-
#oth            21212311231
HQ2845A         ::I:SP::PTS
HQ2846A         E::::::::K:
hla1349         :::::V:::::
NP3236A         ----------: