3 genomes BUD2978 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - - - - - - hla0284 NP0762A HQ1308A

Pairwise sequence scores
Consensus score	2486	NP0762A	hla0284	HQ1308A
1820	NP0762A	2653	1567	1426
2098	hla0284	1567	2496	1643
1942	HQ1308A	1426	1643	2537

362 symbols
consensus       MISPRTLQNLRGELRRSRLAKLGVAIIAVILGMAMFAPLLAPHDPNDQRL------DNTN
#oth            11.1.1211.22..21.2..11.11121.112211...11...1.22.21111111.212
NP0762A         :::D:AK:S:SL::K:::::QI::::M::MFVVT:::::F:::::EQ::VGTGDTE:M:D
hla0284         V::::::R:::S::S::L:::::I:::::::FT::::::::::::T::N:::::::::::
HQ1308A         :L::::W:::V::::Q:P::::::SLFI::::::I:::F::::N::V:H::::::::QKL

consensus       LPPVGFSATANQTSTQMVDGEVQTIEERVQINATAAHPLGTDPLGRDVLSRVIYGARTSL
#oth            1..1.1121212.2111.1.11112212121.112211...121.1.1...121.1.1.1
NP0762A         :::::::T:::E:--RL::::F::--QQ:E:::NSS:V:::NTR:Q:::::::::G:V::
hla0284         I::L::M::E:::::::::::::IV::E:VV:T:::::::::S::::::::TMF::::::
HQ1308A         :::::L:RVTTT:T::::N:S:T::T::T:::::WTY::::::::::M::::L::::::M

consensus       LVGLLGTAIAALIGVPIGLAAGYYGGRVDDALMRFADIMLAFPSLVLAIALVGLFGRA--
#oth            ...11.111.212.112.12...11.11..1...1..1...........1.1.1112211
NP0762A         ::::::A:::::V:::Y::::::FS:::::::::G::::::::::::::::::V:RETDF
hla0284         ::::F::S::VVL::TV:IT:::::::I:::::::::V:::::::::::::I::W:Q:::
HQ1308A         :::V::::L:T:::A::::I::::::L:::T::::::::::::::::::S:::::::I::

consensus       -ALRIPDPLVVAAIAS-------------AEMPENITLPGTVILVVALVNWVWFARVARG
#oth            122221..2.1221111111111111111.2..12211.11.11.11......1......
NP0762A         HTMELT::F::::QSETIPNWLIPRAGHV:S:::SV:F:V::T:::::::::::::::::
hla0284         :S::::::::ELG:::::::::::::::::::::::V::::::V::::::::::::::::
HQ1308A         ::VTV:::W::FN:::::::::::::::::T::ATF::::M::::IG::::::I::::::

consensus       EALSIRDAEYVKAARSLGASDIRIIRRHVLPNSLTPILVLATIQVAAIILLESSLSFLGF
#oth            ..1.1122..11..1.2.2.1221121.....11...11....11.11.....1.11...
NP0762A         ::M:::SE:::T::K:::::NWT:::K::::::I:::I::::::::F::::::A::::::
hla0284         ::::V::Q::::::::M:G::LHL:L::::::::::::::::::I:::::::::::::::
HQ1308A         :::::VE:::I:::::Y:T:::::MT::::::A:::::I::::L:::N:::::::AY:::

consensus       SGTTLSWGFDIAQGQQYLAASWWIATLPGLAIVAAVIGVNLIGDWLRDALDPGIEGEG-G
#oth            ..11.1..1..11.1111221...1.2..11..2..2.1.............1...111.
NP0762A         :::::T::Q:::R::SDQR:Q:::::V::::::L::::::::::::::::::D:::::::
hla0284         ::AQ::::::::::R:::SS::::::M:::::::::V:I:::::::::::::::::Q:::
HQ1308A         :::::::::::S:::::::T::::T::::VG::I::M::::::::::::::::::::SE:

consensus       GL
#oth            12
NP0762A         :V
hla0284         AP
HQ1308A         ::