[R] (-) COG5524 Bacteriorhodopsin 2 genomes BUD2989 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG1660 rrnAC3280 - - - - - - -

Pairwise sequence scores
Consensus score	1763	VNG1660	rrnAC3280
1451	VNG1660	1794	1135
1447	rrnAC3280	1135	1753

239 symbols
consensus       MDAVATAYGGGAAALAVGVAIVGLLYASLDGSDERPALAALAIIPGFAGISYVAMAFDIG
#oth            ....111.111.1111....1.11..1..1..11111..1..1..11..1...1.111..
VNG1660         ::::::::L:::V::I::::F:W:::R:::::PHQS:::P:::::V:::L:::G::Y:::
rrnAC3280       ::::SVV::IT::GF::::::::F:::::E::::::I:::::L:::V::::::::V:G::

consensus       TVIINENQIVGLRYIDWLVTTPILVGFIGYAAGASRRAIIGVMAADALMIAAGAGAVVAA
#oth            ..1111111..1..1..1....1...11..1......1.1...1......11.1....11
VNG1660         :::V:G::::::::::::::::::::YV:::::::::S:::::V:::::::V::::::TD
rrnAC3280       ::T:G:TTL::F::L::V::::L:::::::T::::::::F::::::::::L::V::::::

consensus       GTLKWALFGVSAIFHISLFAYLYLIFPRSVPDDPQRIGLFNLLKNHIGLLWIAYPLVWLA
#oth            ...........11..1.......1....1...1.11....1.....1....1.......1
VNG1660         :::::::::::S:::L:::::::V::::V:::V:EQ:::::::::::::::L:::::::F
rrnAC3280       ::::::::::::V:::::::::::::::::::::::::::S:::::V:::::::::::::

consensus       GPAGIGEATAAGVAITYAFLDLLAKVPYVYFFYARRRVFMHSASKLARDQADTEATAAD
#oth            ..1.1.1..11..11..1...1..............1..1111111111111111.1..
VNG1660         ::::::::::::::L::V:::V::::::::::::::::::::E:PP:PE::TV::::::
rrnAC3280       ::E:L:F::YV::S::::::::::::::::::::::Q::---:T::L::SG::TV:P::