2 genomes BUD3068 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1806 HVO_B0143 - - - - - -

Pairwise sequence scores
Consensus score	4841	rrnAC1806	HVO_B0143
3625	rrnAC1806	4722	2165
3381	HVO_B0143	2165	4433

641 symbols
consensus       MDEAGSAIRVLHVDDDRDFAELTAAFLERERDAFRIEIATSAAEGLRRAEDAAFDCIVSD
#oth            11.111111..1....1111.1.....1..111.11.1...111..11111111..1...
rrnAC1806       :G:::::::::::::::QY::T:::::K:::V::D:::::::RK:::LL:T::V::::::
HVO_B0143       V::----VV::Y::::E::T::::::::::C:R::V:T:::V::::N::G:ST:::V:::

consensus       YDMPERNGIDFLEALREDAPDLPFILFTGRGSEAVASDAISAGVTDYLQKAQDTSQYALL
#oth            .1..111.1....11...1.......1..1...1................111..1.11.
rrnAC1806       :E::GQ:::::::SV:::Y:::::::Y::::::::::::::::::::::::P:::H::::
HVO_B0143       ::::::D:L::::::::::::::::::::E:::E::::::::::::::::E:G::::TV:

consensus       ANRIENAVERHRSQRALEASEDRLSLFIDQSPLGFLEYNQDFQIIRLNERGEEILGYTEE
#oth            1...1...111.........11......1.....11..11..1.111..111..1....1
rrnAC1806       S:::V:::KQY:::::::::K::::::::::::::V::::::E:V:V::TLT::F::::T
HVO_B0143       :::::::::::::::::::::Q::::::E:::::V:::DS:::::G::::::::::::::

consensus       ELRGESWETIVADDSYDNVDAVTDALAEAEGGYHSINENVRKDGERIRCEWHNRLITDDD
#oth            ..1.11..11.111...1.....11.11.1.....11........1.11.....11...1
rrnAC1806       ::L::T:::F:SSE:::D:::::S::S::S:::::V:::::::::::VV::::::V:::S
HVO_B0143       ::::H:::V:::::::::::::::Q::V::::::::D::::::::H::::::::V:::::

consensus       GDVVGIISHCQDVTERIRRENNLARLRALLAEAEEIRALGAGELAENGDRTWLAGNRRIH
#oth            .1..1.1.11......111.11.111111111111111.111111.1111.11.111.11
rrnAC1806       ::::T:F::::::::::EH:Q:::Q::DFF:::::LG::::W:YD:S:MS::T::T::::
HVO_B0143       :E::::::LF::::::V::::E:E:TN:::STL--::S:PV:V::::S:::V::I:D:LL

consensus       ELDDDFDPSTELIGADCRELARKHPELVVDREGFSDAVDAAIADGDPYDNESRAITARGN
#oth            .111111.11.11111111.11111.111.1.11111..11111111111.1111.1111
rrnAC1806       :V::::::TV:------DG:SFY:::---:::TV:::::::LN::::::L:V:L::::::
HVO_B0143       ::FGISE::::::::::::::::TS:::::S:::VER::EL::GTESVH:::V:L:NG--

consensus       HRWVRTRNRRYEGAELPDGRGHIWMYRDITEQRERERRLRRQNERLDEFASVVSHDLRNP
#oth            1111..11111.11.1.111.111111.1...1...11.11.....11.........11.
rrnAC1806       :::::::GK:V::::K:TV::F:---Q:::::K:::::::V::::::S:::::::::QG:
HVO_B0143       ----::L::S::PI:::::T::L:::::T:::::::QQ:Q::::::S:::::::::::::

consensus       LNVAAGNLELARQDHANDQLASAAAAHARIDDLIDDILTLAREGRNAGEREPVNLRTAAT
#oth            .1..1.11...11.111.1.11111.11.111....1.....1.111111...1.1.11.
rrnAC1806       :T::Q:H::::Q::V:::H:D:ID:::E:MQT:::::::::::::E:TTT::::::::::
HVO_B0143       :::::::V::::E::ES::::T::R:L:::::::::L:::::K:D:V::::::S:G:LV:

consensus       ACWETIETEDAALQTDLDATVLADRGRLQRLIENLFRNCIAHGSESSPSQVQQDSMEHGQ
#oth            1....1..11.1.1..1111.1..11...1.11..1..111..11111111111111111
rrnAC1806       :::::M:::S:::E::T:SV::::P::::::FS::::::V::::::::::::::::::::
HVO_B0143       D:::::::G::E:::::T:::V:::S:::Q:::::V::S:E::-----------------

consensus       MGQPGQSGEAVENGDGVTVTLGDIDDASGFYVADDGPGIAADRRNSVFQAGQSTAREGTG
#oth            1111111111111.1..1..1.111.11....1...1..11.1.11..1..11.111...
rrnAC1806       ::::::::::::::G::::::::::::::::::::::::PE:E::T::E::Y:::S::::
HVO_B0143       -------------::::V::V:ELP:--::::E:::V:::::::D:::::::T:S:T:::

consensus       FGLAIVADIAAAHGWDVSVTDSDGGGARFEITGVDKAAADR
#oth            ......111.11...1....1.11..........1111111
rrnAC1806       :::::::::::V::::::::::ES::::::::::::EM---
HVO_B0143       ::::::KQV:E::::T::::E:::::::::::::TF:::::