2 genomes BUD3089 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0188 HVO_B0216 - - - - - -

Pairwise sequence scores
Consensus score	2990	rrnB0188	HVO_B0216
2555	rrnB0188	3005	2218
2653	HVO_B0216	2218	2978

406 symbols
consensus       MAIVIVGTLDTKGEEIAFARDVIEAQGVDVHLIDVGVLDDAEIEPDTDAAAVAEAAGSTL
#oth            .11.1..........11.....1.1...1..11.....111.1....1.11....1.1..
rrnB0188        ::::L::::::::::F:::::::::::::::V::::::::::F::::T:TE::::::T::
HVO_B0216       :SV:::::::::::::G:::::L:E:::E:::V:::::GEP::::::::::::::G::::

consensus       DTLREAGDRGEAIEAMGDGAAAVVSRLHEEGRLAGILGLGGGGNTSIATAAMRALPMGVP
#oth            11...11...1.111..1...1..11.111.1.1.1.....1....1..1......1...
rrnB0188        :V:::ES:::::MT:::E::::::TD:F:S:E:::V:::::S:::::::R::::::V:::
HVO_B0216       E:::::::::K:::I::::::V::::::S::::D::::::::::::V:::::::::::::

consensus       KLMLSTMASGDTEPYIGSHDIAMMYSVADIEGLNQLSRQVISNAALAIVGMGSNEPDVET
#oth            ...1...........1.11...................1........1...111.1..11
rrnB0188        :::V:::::::::::V::T:::::::::::::::::::::::::::::::::TT:S::TV
HVO_B0216       :::::::::::::::::Y::::::::::::::::::::T::::::::M:::V::::::::

consensus       EDRPTIGITMFGVTTPCVQAARDHLEARGYETIVFHATGTGGRAMERLIREGIIDGVLDI
#oth            .11..1.............1..11..11..............1...1..1..1......1
rrnB0188        :::::V::::::::::::::::E:::GW::::::::::::::Q:::::::::::::::::
HVO_B0216       :EK::::::::::::::::R:::W::::::::::::::::::::::S::E::V::::::V

consensus       TTTEWADELVGGVLAAGPERLDAAAQRGIPQVVSTGALDMVNFGPRDSIPDEFDGRQFHV
#oth            ..............1...1......11.1................1..11...1......
rrnB0188        ::::::::::::::N:::::::::::T:V:::::::::::::::::::V::::E::::::
HVO_B0216       ::::::::::::::::::G::::::E:::::::::::::::::::K:::S::::::::::

consensus       HNPQVTLMRTTPEENAELGRIIAEKLNAATGPAALALPLGGVSMLDAEGEAFYDPEADAA
#oth            ..............1....1.1.1........111........1..1..11.......1.
rrnB0188        ::::::::::::::C::::E:L:T::::::::::V::::::::V::V::KD:::::::::
HVO_B0216       ::::::::::::::::::::::::::::::::TT::::::::::::::::::::::::D:

consensus       LFDAIREHIDDAVELIQMEANINDDAFARALAEAIDRRMRAAAVGP
#oth            ....111.1.11...1111.1...11..11...11.11....1111
rrnB0188        :::::HK:::P::::FE:::P:::E::::::::KL:EY::::G:::
HVO_B0216       ::::L:::L::D:::::SP::::::E::LT:::::::::::::---