[T] (RAD55) COG0467 RecA-superfamily ATPases implicated in signal transduction 2 genomes BUD3109 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi VNG5029 VNG6028 VNG6240 - - Hbo3074 - - - - -

Pairwise sequence scores
Consensus score	4089	VNG6240	VNG5029	VNG6028	Hbo3074
2785	VNG6240	3748	2692	2692	2614
3996	VNG5029	2692	4079	4079	2940
3996	VNG6028	2692	4079	4079	2940
3033	Hbo3074	2614	2940	2940	4004

537 symbols
consensus       MSSPNLAHPPTDYTGIALFPREISRFFMGDAGETLLINGAPGTGKTLFTIRGLDVLDRDG
#oth            11222221211222.111....111..1.11.21..11..................2.11
VNG6240         ::ARTPL:A:PSHE:::H:::::R:::T:EP:Q:::V:::::::::::::::::::S:E:
VNG5029         ::::::::::::::::V:::::L:Q::::::::::::::::::::::::::::::::::S
VNG6028         ::::::::::::::::V:::::L:Q::::::::::::::::::::::::::::::::::S
Hbo3074         --------LL:EQQ:R:::::::::::T::P:HA::VK::::::::::::::::::E:::

consensus       DVLYVSTRVDQETVHEMYFADHSSLDTTAILDLFQDPFELPLDVDVPFEKLDLDSLLEWI
#oth            ...........1..1...112.21..2.11...1....1..1.1.....2.1.11..1.1
VNG6240         ::::::::::::::Y:::VEG:AA::R::L:::S::::G::M:::::::T:N:E:::S:V
VNG5029         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6028         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3074         :::::::::::D:::::::EE:F:::K:S::::S:::::::::M:::::R::::A:::::

consensus       QEINAATTQLTIAFDSWELIYEYLAVRHDDPPDIETVTNQLAALAREENIRLMLVSETAA
#oth            1212.1212..1.....1.1.....2...2..1.1...1..11...2121..2..1...2
VNG6240         DA:S:PA:K::L:::::R:V:::::A:::S::S::::::::V::::DAGV::V::::::T
VNG5029         ::::::::::::::::::::::::::::::::::K:::::::V::::::::::::T::::
VNG6028         ::::::::::::::::::::::::::::::::::K:::::::V::::::::::::T::::
Hbo3074         :QVK::SKR::::::::::::::::T:::E::::::::T::V::::Q:D:::L::::::D

consensus       PSPLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNRLQPFTLADGQFQAITPVEL
#oth            2.1...........1.2111......2...1.......1.....1...1...11......
VNG6240         Q:::::::::::::H:TDNE::::::Q:::E:::::::E:::::::::::::K:::::::
VNG5029         ::S::::::::::::::::::::::::::::::::::::::::::::::::::V::::::
VNG6028         ::S::::::::::::::::::::::::::::::::::::::::::::::::::V::::::
Hbo3074         S:::::::::::::::A::E::::::H:::E:::::::::::::I:::N:::::::::::

consensus       LTIQTGTGNGTWDPLANSKAKFSTGIRDLDRILSGGYNRGSVVHLDLGPDLSRDAWSVLT
#oth            2.21111121..2.11.11.1.....1...2.....1...1....1..2.......1..1
VNG6240         S:T:SVPDEA::E::::PT:R:::::::::T:::::F:::G:::::::A::::::::::V
VNG5029         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6028         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3074         P:VH::::S:::K:RP::::::::::S:::P::::::::::::::E::T:::::::C:::

consensus       LPTIRNFLSNEMGVAVVPPREGSPGLLHNDLNTVLSSQVFDTYCHVFETYAGPSRSADRY
#oth            ..1.....21.........1...........12..122....1..........1112.21
VNG6240         ::A:::::A::::::::::K:::::::::::SA:::KA::::H::::::::::T:DH:DA
VNG5029         :::::::::Q::::::::::::::::::::::::::::::::::::::::::::D:::::
VNG6028         :::::::::Q::::::::::::::::::::::::::::::::::::::::::::D:::::
Hbo3074         ::::::::V:::::::::::::::::::::::S::TPR::::::::::::::::::K:T:

consensus       DQPDSTESFSEMATTTPPDDAPTATH-ETDGADDGSRSTDGVTGSDQPHPIDEDFESPIE
#oth            221.221221222222122.2222221222222221122121222222221112211.2.
VNG6240         VD::R----------L:GH:T-----:-----------------------------T:T:
VNG5029         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
VNG6028         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3074         END:QS:AP:GTSRAVSKS:VDSSIGIGATRREEQ::TS:D:VERNRSTT:::RL:::V:

consensus       GGQLAYEPYMAYVEQVREESDDPLLHVISMDTAQEAFETRLGDFANYVALHNDLTLLITK
#oth            1.1.2.1..1111.11.12.11...........221...1.............122....
VNG6240         H:T:S:D::I:RA:RI::H::G:::::::::::YH::::::::::::::::::ASV::::
VNG5029         ::::::::::::::::::::E:::::::::::::::::::::::::::::::::::::::
VNG6028         ::::::::::::::::::::E:::::::::::::::::::::::::::::::::::::::
Hbo3074         ::::D:::::E::::::KQ::G:::::::::::RST:::W::::::::::::::AI::::

consensus       QGTELRTRADRVADMHFRLERSGDAIILYGENPLTPLLGIGIDQSESIPKITLTEMV
#oth            1..1..1.........1...11.1..2....1...11....11..21..2.......
VNG6240         P::A::::::::::::::::CA::::V::::T:::::::::V:::GT::E:::::::
VNG5029         ::::::::::::::::::::::::::::::::::::::::::S::::::::::::::
VNG6028         ::::::::::::::::::::::::::::::::::::::::::S::::::::::::::
Hbo3074         P:::::K:::::::::L::::::K::M::::::::SM::::::::Q:::R:::::::