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2 genomes BUD3135 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC1917

rrnB0316

-

Hbo0382

- - - - -

Pairwise sequence scores
Consensus score2550 rrnB0316 rrnAC1917 Hbo0382
1531rrnB0316 2465 963 1065
1721rrnAC1917 963 2522 1287
1861Hbo0382 1065 1287 2679

367 symbols
consensus       MAHGEYRID---RRTFVAGA-TATAALAGIAGLTAARENNGNEAGSRDAEDMNDDGITTD
#oth            222211212111..1112121121212211212111212222222222221221212111
rrnB0316        ::::MV::PDIC:::VLKS-::SA:::GS:V:TG:::::D---------H:STEPP:A:T
rrnAC1917       --MS::-:G::::::::E:T:A::L:SS::::S:::Q:S::G:S:TD::T:TE:E:M:D:
Hbo0382         VSWK::KL::::::S:::::L:G:STV::VSS::SVVPPET:T:S::ES:R:::::-:::

consensus       PALIAHRGFAGVYPENTEAAVQAAAFGGRRSQGAD--ADMVECDIVPTA-------DGEI
#oth            1211....11.1..1..22..22.22.122212221111.1.2.2..111111111.122
rrnB0316        :I:A::::YR:L::Q::I::::Q::Y:::::::Y:::T::M:::L::AGGKPWKGE:F::
rrnAC1917       TT::::::::::::::::L::E::S:::PGT:T:HRR:::::V:V:::::::::::::TL
Hbo0382         ::I::::::::::::::VG::GR:TW:DD------:::E:::I:::::::::::::::KV

consensus       VVFHDNELANRDGGERGLTDEDGYVWENNTETVQNAEVLDSGETIPRLEQVMDAIPDSAA
#oth            .1...22.2211111111..22.1.112221112111112111.1.1.12121.1.1122
rrnB0316        :::::DK:D:-------::::S:::::::V:::L:::IR:::Q:::::DEFVE:T:::IP
rrnAC1917       :T::::G::E::::::::::TE:L:F:TD:D::T::T::GTE::V:T::T::::::P:V:
Hbo0382         :::::S::SG:::::::P::L:::::DHSW:EL:ET:::Q:::::::::::F:::::D:G

consensus       VNIEFKNPGSDNVAFAEDLSAAALETQRELWRPMTERALDIASDAENDILVSSFQEAALA
#oth            1.1.1.11.2221211121.1221111212.1.21.2..1221221..21.1..21...1
rrnB0316        L:::W:AA:---:SPDD:A::S:V::----:D:F::Q:::VL:TH:::FI:Q:::K:::Q
rrnAC1917       ::L::::::::DL::::S::DQT:S::::::::Y::::::LV:EYD::::::::Y:::::
Hbo0382         :::::::::TT::R:::K::::E::S:M:V::::A:T::E::A:::::V:::::H:::::

consensus       SVRDIDPDVPIACLFWDSIEEGLAVTRRYDCEAINPPYNMIQGTPFFNDDYYLDDP-FAD
#oth            2.112.111.112.1.....1..111.21.111121.11.111....1121.12211111
rrnB0316        ::QNS:::I:::Y:L::::::::::V:DL:A:Y:Q::::::MN:::::E::::E::G::E
rrnAC1917       T:::Y:DS::V:F::::::::::E:::::::D:M:V:RH:V::::::::SE:I:SD:LS:
Hbo0382         V::::::::::G::::::::T:::I::E::::::H::::::::::::E:E:::SG:::::

consensus       IDLVEIAHEEGRAVNTWTIGTWYQAERLVEAGVDGLIADYPNVLDIAD------------
#oth            1...12.11.1.21111.11..1..12.11.....1.1...21.2222111111111111
rrnB0316        :::::T::::::K:IPY::T::H:::K::::::::I:::::G:::---::::::::::::
rrnAC1917       ::::D::AD:D::L::::V::::::WE::Q:::::::S:::T::S:Q:::::::::::::
Hbo0382         V::::V::::::T:::::::::::::::A:::::::::::::L:WS:ENTVDNDNDSDDT

consensus       -------
#oth            1111111
rrnB0316        :::::::
rrnAC1917       :::::::
Hbo0382         NDSDNDK