2 genomes BUD3145 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0004 - Hbo3854 - - - - -

Pairwise sequence scores
Consensus score	3096	rrnB0004	Hbo3854
3018	rrnB0004	3096	2928
3006	Hbo3854	2928	3095

412 symbols
consensus       MAPRFQPDDTLYKRRNTLKVEYVPDDIVGRDNEIEEYEAALQPIINGEYPDNIFIYGKTG
#oth            .1..........................................................
rrnB0004        :G::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3854         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       VGKTAVTNFLLNELRESADHFEVDLSVISLNCDGLSTSYQAAISLVNNLREHENHIAETG
#oth            ..............1...1......1........................11.1......
rrnB0004        :::::::::::::::::::::::::T::::::::::::::::::::::::G:::::::::
Hbo3854         ::::::::::::::Q:::E::::::::::::::::::::::::::::::::P:H::::::

consensus       HPQSKVYRLLWNELNKLSGSVIIVLDEIDHITDDTFLYQITRADNNGYIDNIQLGLIGIS
#oth            ...........1.......1...................................1....
rrnB0004        :::::::::::::::::::::::::::::::::::::::::::::::::::::::V::::
Hbo3854         :::::::::::D:::::::T::::::::::::::::::::::::::::::::::::::::

consensus       NDSTFREQLDAKVQSSLCETEISFPPYGTEELQKVLEQRADIAFHQSALEDGVIPLCAAL
#oth            ........................................1....1..............
rrnB0004        ::::::::::::::::::::::::::::::::::::::::E::::E::::::::::::::
Hbo3854         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       GRQDGGDARRAITLLRKAGDLARTENANSVTTDHVERAQEKLEAQQSMDIMRDLTEHEQL
#oth            ...........................1................................
rrnB0004        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3854         :::::::::::::::::::::::::::E::::::::::::::::::::::::::::::::

consensus       TLYALTTLAAENATPARSRIVYQRYKELCEFQGRDPRTARRMRSFLSDFEILNLTLSQME
#oth            ...........11......1..........1...1......................1.1
rrnB0004        :::::::::::GE:::::::::::::::::::::E::::::::::::::::::::::E::
Hbo3854         :::::::::::::::::::V::::::::::Y::::::::::::::::::::::::::::V

consensus       HRGQDGGTYRQHELNRDIATVVDALQTIIGEFGAHRSIIEYLPDSGEEFAAM
#oth            ..........1..................1.....1.............11.
rrnB0004        :::::::::::::::::::::::::::::::::::Q::::::::::::::T:
Hbo3854         ::::::::::E::::::::::::::::::S:::::::::::::::::::V::