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2 genomes BUD3149 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2295

 -

Hbo1831

 - - - - -

Pairwise sequence scores
Consensus score4613 rrnAC2295 Hbo1831
3352rrnAC2295 4526 772
2033Hbo1831 772 3390 

601 symbols
consensus       MQRADLAHKSEMERRIEAAISELDSQPIAFIDEGIPIRYFGAPNWTELLRKISEISAIDR
#oth            .11111111..111111111.111.1111.111111111111111111111111111111
rrnAC2295       ::::Y:DY:::::N::::C::::K::::L:VGT:LS::::::::::::::::::::::E:
Hbo1831         :SSS:T::W::TL:VMLN:S:TT::EVT:::::T::----------------------:G

consensus       DNELYDNKRNNEREIAQAFAQAYNEWAWNSSDDGGERNFPPWLFDGDAPEDIYLKYEVAR
#oth            1111.1111111111111.1111111111..11.1111.111111111111111111111
rrnAC2295       :Y:F:EQTK:::::::EE:::M:::::::::E:::KDQ:::::::::::::::::::::N
Hbo1831         E:K::::::-------:::IH:------D:::Q:K::::--------------------:

consensus       LIRNLTPSSICALANRRGEEIELLKDIQRHAYIFINFDDFLEDFIGAQDWDANGGQRLIE
#oth            .11111111.11.1.111.11111111.111111111111111..111.11111.1111.
rrnAC2295       ::::::::::SD:S::NK::::::::::P::V:TT:Y:T::::::-F::YERVI::::::
Hbo1831         :LKH-----::::::T:::--------::YR:L::G:G:S-GG::::S:::::::EHVV:

consensus       EDEARIQDIFKIHDCLDRPPEIVLTESDFTDFDETKNYLSAKLLTFFTERPVLIVGYRPN
#oth            111.1111111111111111.111111111111111111111111111.11..1111111
rrnAC2295       :PF:N:GE:::::G:VT::S:::::::::::::::::::::::::::::H::::::::::
Hbo1831         V::::V::L--LS:S::PV::V--------------------------::T::T-----Q

consensus       DDNTAAILSDVKSAIRRSDRQPNIFLVDWDSDIPESGNFNAERLIDLGDGDQMTVNYIRA
#oth            .1.1111..11111111..11.11.1111111.11..111111.111.111111.1.111
rrnAC2295       :P:VKK:::::::::ET::::::::::::E::::::::::Q:::::::::::::::::I:
Hbo1831         ::::::V::-----V::::SP:VL:----:TS:TT::--G:TT:VKS:------:G:V:-

consensus       DDFDWVFDAFSGGGEIKGSNSRLLRKLLNNDYRIIREEAPRREDAFNELEKIADALDNLQ
#oth            1111111111111111..11.111.111.11.1111.111...1111.1111111111.1
rrnAC2295       ::::::::::::::::::V::K::::::::T:D:V::::::::I::S:::SV::NK:::L
Hbo1831         ----------------:::Q::PM:---:S:::V:I:---::::LV::--::EE::GG::

consensus       RIFGISPDDGENGEIGASSNPSSIADAGVPIDQIISDEDYDNLNDRLSLAVEEWNQSDEL
#oth            111...1111.1111111111111111...111.111.1111.111.111.11..1111.
rrnAC2295       N::::::L:::D:SV:N:T::::::E::::VG:::::::V:::D:I:TV:::S:::Y:V:
Hbo1831         :MV:::S:QL::L::S:T:-----S:E:::::E:VTT:G:SD::K::::S:K:::S:G::

consensus       MEHREAIYTMLKRRRELELDNERCDFLARSSINNNFQGSEWIIRHENDIEDNLLSNMQAQ
#oth            111.1.1..11.1.1....1..111..11.111..1111..1.11.1.11.1..111111
rrnAC2295       :::::::::FY:Q::::::T::KI:::Y::::I::V:::::L::Y:G::-::::T::HSI
Hbo1831         YSS:G:V:::::::D:::::::::E:::W:TL::::PPT::::H::::L::S:::FY:::

consensus       LNGRNIANLEANNLILENERHIRAICDDELADFQSSNADRYLDLCEDPLEERIRDLTARR
#oth            ....1.111.11111.11111111.1.1111.111.1.11..11111.111111111111
rrnAC2295       ::::::::::R:L:::GKSE::SD:::T::::SSY:::E:::E:::E:::T:V:EYVGE-
Hbo1831         ::::M:SVF::V:YM:::::VL:::S::GSM:::::K::T:::SIT::PV:K:E::::::

consensus       NIRIQDHDYPIDDILSGNEPIENGLDDIVDRLIADDQGNDRRALRNIELTRIANSPLGDN
#oth            1111111..111.11111111111.111..1..1..1111.111.1..11.1.1111111
rrnAC2295       S::F::T::SV::L:::::S:I:L::::::S:::::::PT:::F:::::V::::::::Q:
Hbo1831         :LN:TG:::::T::VTSGG:V:T::EEV:::::S::ES:::SI::D::Y::L:QYVSS:P

consensus       E
#oth            1
rrnAC2295       -
Hbo1831         :