2 genomes BUD3157 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2611 - Hbo2159 - - - - -

Pairwise sequence scores
Consensus score	1893	rrnAC2611	Hbo2159
1331	rrnAC2611	1816	448
1010	Hbo2159	448	1697

256 symbols
consensus       MCQGRSGRMNRQHAAAALIAAIALLSFGVAAASLDAAQGADQADMSRDDGEIDDADSGSG
#oth            11111111.1.11111111111..1111.1.11.11.111.11111.11111.1111111
rrnAC2611       :::::::::Q::SLLV:VV::::::::S:G:::::::T:S:::E:T:::S::::P:----
Hbo2159         --------:::S::::L::TVL::STV::::ST:PS::P::LP:-::SQ:GF:E:H::::

consensus       GQGASDPINHIALPDLNSENGARADLRSQPAPAVGALAVGLALGLAGIALVLWRLAGDDR
#oth            .1.1.11111111.1111...111111.11111..1.1..1111..1111.....11111
rrnAC2611       :::L:::PGS:DP:E--:::::::L:P:V:::::::::::::V:::----:::::::QS:
Hbo2159         :K:::QS:::L::::::V:::VKS:-:::SKST::R:V::VV:F:::::::::::TS::S

consensus       QAAREGEEEPAVATAESARQPAHSAARINIPLTNDVYRAWAALEHALAAERRAQETPQDI
#oth            11111111111.1.1.111111..111111.1..1.....11.1111111.1111..111
rrnAC2611       TIDET:G:T::::::::::::S::::E:D:::::::::::::::::V:P:::SS-:::::
Hbo2159         :::::S:K:TD:S:D:VTSEV:::KR:-:L:P::E:::::NT:GTS:E:H:E:::::TEF

consensus       AARASAAGADRNAVARLRALFCRVRYGRDQPDADREKRARNALERAQRDSDDIVANPDDV
#oth            111.11..1111..11.111.11....111.1..1.11.11...111111.111111111
rrnAC2611       E:D:T:::::PD:::S::SV:E::::::::::::L:SQ::E:::::TD:T::::::::::
Hbo2159         :Q:::R::LP::::E::T::::S::::GEP:T:::::::Q::::QI::T::S--------

consensus       ASENKNAADSAGEANE
#oth            111111111..11111
rrnAC2611       :::::D:NE::::::T
Hbo2159         -----:S::::SSLS: