2 genomes BUD3160 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0103 - Hbo2827 - - - - -

Pairwise sequence scores
Consensus score	3426	rrnB0103	Hbo2827
2520	rrnB0103	3386	1522
2428	Hbo2827	1522	3319

448 symbols
consensus       MTRNSTTSQGEAQQGRRAIISAAGAALGAGALAGCIGDIRGGSGADSISIAASEGDGRLI
#oth            111111111111111..1111.1.111111111..1.11111.1111.11.111.1.1.1
rrnB0103        ::::::::::::::T::RF:T:::::-::T:F::::::SS::::TQT:TL:V:S:::E::
Hbo2827         -------------M:::::L::G:TM:TG:L:S::L:T::--:S::::::::T::E:::F

consensus       RRLLDNHVADETGIETNTEILPNAALFEQNRKLLAEQNAEFDIVAIDDPWMPQFARDLAP
#oth            1..1111.11.1.11111111.111.1.1111111111111.1.11....1....11.1.
rrnB0103        K:::K:::ES:V:VT:E:T:::::N:::KLSTMFQSEK:TY::::M::::::::::H:::
Hbo2827         :::T:EF::::::::V:V:LK:YD::Y:::::::::::D:::L:F:::::F::::S::E:

consensus       IRDHLPDGLPADQIIQQTLDIAHWPTPREALPPNAQDADPELRALCAVGNSQIFAYNARL
#oth            1.1111.11.1111..1....11....1111..111.11.1.11.11...11..11.111
rrnB0103        V:::V-:S::T::::::::::GT::::G::V:::::::E:::K::::::::H::VV:E::
Hbo2827         ::QY::::V::E-Y::T:::::::::::GP:::EVS:E::V::G:VV:::T:::::::TY

consensus       FDQVGEDLPETWQDVLRAGRAIDAQIDGAEGYAIRGAQGNPIMSNFFPVGMSQAGRMFDA
#oth            111..1.1...11..11..11.1111..11..11..11....1111.1..1.1..1...1
rrnB0103        YSE:::::::::E::Y:::QK:SE:V:::::::M::KS::::::SY:S::::M::N:::E
Hbo2827         :::::Y:P:::Y::::E:::::::E:::TH::V:::::::::VT::::::F:::::::::

consensus       NWRFDWADREGIEAAAFLLNDLADISPADVAKFNNDQVLSGLADGSIAAAPQWPGGASLA
#oth            1.111.1111.1..11.1111.11...11.1111111.111.11.11.1.11..111..1
rrnB0103        ::GY::::DS:::::::F::::GS:::DG::S:D:S::::::::::::::::::S:T::L
Hbo2827         D:::Q:GS:::V::VR::VQE:::::::::T:Y:E:E:VTT:SQ:TV:Q:ST:::T::::

consensus       IAENKASAYRNIKFLPIPENADGRAAPQQGNWILGINSHADAAAKKAAGDVIQSFVSKQA
#oth            11.1111111111.11..11111.1..1....11....111111.1.1.1.1......11
rrnB0103        LN:D::TE:E::T::::::GTK-::::V::::L:::::Y:::ET:S:::::L::::::::
Hbo2827         ::::SP::-:DL::TV::S:::::R::::::::V:::::TSE:::::G:K::::::::EG

consensus       QERYVDIGGVPFRHDTFENNLDAQPWFEALYESLQNAQPRPRTPLWSEIERAQGQRLNAA
#oth            ..1...1...........111..........1...1.11........1..111.11.11.
rrnB0103        ::Q:::L:::::::::::EKM::::::::::G:::::K::::::::::::T::::P::::
Hbo2827         :::::::::::::::::::::::::::::::::::D::W::::::::I:::EL:V::HS:

consensus       LGDNISADEAMREAESQIESILDNAGYY
#oth            .1111.11...11..11...1.111..1
rrnB0103        :V::M:VE:::T:::::::::::EN::-
Hbo2827         ::GP::::::::G::TK:::V:E:::::