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2 genomes BUD3163 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC3543

 -

Hbo1561

 - - - - -

Pairwise sequence scores
Consensus score2650 rrnAC3543 Hbo1561
748rrnAC3543 1121 413
2315Hbo1561 413 2662 

357 symbols
consensus       VSRDRTRAALALLCVVVVLFGGSLFPTAGFGSYPAGIRGGAGLPGALGDSPGSGIDDRAT
#oth            11111111111111111111111111111111111111.11.1.1.1.111111111111
rrnAC3543       ----------------------------------MSL::V::::S:::------------
Hbo1561         :::::::::::::::::::::::::::::::::::::G::N:V:::P:::::::::::::

consensus       PTPSPTEAAQTADDGQTETATGTPTPTPTPTETPVSDGPTDDGISMDGAFAGIMLIIGVC
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC3543       ------------------------------------------------------------
Hbo1561         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       AAGLLVFSLAPGIDEQTTFAGLPIARFQTNLRAFFAAVPRRTTSFLVGLSASVPGVLDRV
#oth            111111111111111111111.1111.111111111111111111111111111111111
rrnAC3543       --------------------S:SV:P:---------------------------------
Hbo1561         ::::::::::::::::::::::::G:::::::::::::::::::::::::::::::::::

consensus       FSVTVAAAESFGVIAKGLVRGSGRALAGLGGSLGTVVTVLPRAFGGGLAALRGGLLRADS
#oth            11111111111111111111111.1.111...111111111111..1.11111.11111.
rrnAC3543       -----------------------:::S:F:::------------::F::SV:S:V---::
Hbo1561         ::::::::::::::::::::::::T::V::::::::::::::::::::S::F::::::G:

consensus       GGLFGRRDNERRQNDASESPTADTDDEPDIDPQSVQEAWALLADRVPIGNREAATPGEYA
#oth            11.1.1111.1111111111.1111111.1111..1....11.1..1111111.......
rrnAC3543       PS:::SS:S:Q::ST:T::-:SE:::G::::SL:::::::::::::SVSDP:T:::::::
Hbo1561         :::T:::G:::EP::G:PT::::VEE:T:PT::::E::::MM:E:::::::K::::::::

consensus       RAAIAAGLPAEAVRRLTRAFRRVRYGGRSARGDRLESARAALSRIRELLDSNGRENA
#oth            .1.111.1.111.1...11.11.1...1.111.111.1.1..111.11.111.1111
rrnAC3543       :R::DS:::::P:::::VL::E:E::::::T:::T:::::::---::::---::GDD
Hbo1561         :::V:::F:ES::Q::::::E::::::K:G:-:E:P:V:D::::::SF:::::G:::