2 genomes BUD3166 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1486 - Hbo2329 - - - - -

Pairwise sequence scores
Consensus score	3080	rrnAC1486	Hbo2329
2238	rrnAC1486	3015	1379
2221	Hbo2329	1379	3075

410 symbols
consensus       MDRGAEQLVGALFRSLADEGRDETREALLDSYQNKASRDRDALAANLLSELLALLDARLD
#oth            .1111.11..1..11..1..11.1111..11.111.111.11.11111...111.111..
rrnAC1486       ::D:::L:::E::Q:::E:::T::::::::V:::S:V:E:E::SRT::::::::::::::
Hbo2329         :K:HT::F::::::V:::::H::VQKR::E::HS:::I:::E::::MF:::VTV:HQH::

consensus       RRDEIDILANATRHLLNRFSAMIQSIPAAIVVLDAARQIQLWNDGAERLFGWDESQILGR
#oth            111.111.111111.11...111111.1.1..1..1111.1..1....1...1..11111
rrnAC1486       :ET:VE::::SVGS:TE:::::V::::::V:::::E:S::F:::::::::::::::VV::
Hbo2329         T:::::V:TT::::::::::TV:GVV:V::::V:::G:V::::E::::T:::S::E::TQ

consensus       PYADTLAEPPDLADRLRARLEAGERLDGVESRHRHANGSILDVRLWAAPLSGRESGFDGA
#oth            1.11..1111111111111.11..1.1...11.1.11..1......1...11111111..
rrnAC1486       ::::::::S:ETL:::L:S:VD::S:T::::C:::::::S::::::G:::T:EST--:::
Hbo2329         S:LE::SP:T:::ETV:G::::::::::::T::Q:QD::::::::::::::H:::::G::

consensus       ALFVHDISEQKQREQRLAVLNRLLRHNIRNDVNVIRGHLDLLIDELPRNDEHADIIARRI
#oth            111.1..1.........1....11........1.11...11.1.111111..1.1.11.1
rrnAC1486       S::::::::::::::::T:::::F::::::::T::::::E::S::--:ES::I::::D::
Hbo2329         :FV:S::T::::::::::::::V:::::::::::VQ::::M:::S::E::::::V:Q::L

consensus       ENIRELSDAARQIEQLQNDDEREQATLDLRALLRDRADRLDAEHPNAEIRADLQEEGRVA
#oth            11.11..1..111.1..11111111.1.111..11.11..11.1111.1111111111.1
rrnAC1486       :D::G::E::H:::K:::S::T::T:F:P:V::C:::G::Q:::TTI:L:Q:::V::H:V
Hbo2329         T::I:::::::YV::::S:GM:SF:::::G::::T:L::::S:Y:::::H:TMP:SL:::

consensus       AHELLPYALDNILDNALEHNDADTPQVDVDVQPAVDDDRRTIRIADNGPGLPETERAVLT
#oth            1.......1..1.1..11...111.1.1.1.111111..111.11.1........11...
rrnAC1486       G:::::::F::V::::V::::::::::::V:E:::EG::VVL:V:::::::::::Q::::
Hbo2329         :::::::::::::E:::K:::SGV:H:T::::TE-:::::::::E:D:::::::::E:::

consensus       TRTETPLTHSAGMGLWLAQWILRESDGDISVEDGRFGGTRVEIRLRAPPD
#oth            .1........1.1....11..1.1.1.111.11111...1.1.1.11.11
rrnAC1486       :G::::::::T:T::::T:::V:::::S:::SES:::::E::::::R:V:
Hbo2329         ::::::::::::::::::S::::H:G::LT::::QS:::::T:Q:N:::Q