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2 genomes BUD3180 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC3541

 -

Hbo1563

 - - - - -

Pairwise sequence scores
Consensus score3546 rrnAC3541 Hbo1563
2385rrnAC3541 3063 1378
2539Hbo1563 1378 3321 

469 symbols
consensus       MSGRGRVTTRSTQSDLSLASTLLSSGPARTDIGLVFALFAGAAGIVVSEPAMFMSAAVAL
#oth            1111111111111111111111111111111111111111111111111111111.1.11
rrnAC3541       -----------------------------------------------------:V:::::
Hbo1563         :::::::::::::::::::::::::::::::::::::::::::::::::::::V::I:GF

consensus       VYAAYRAANRDPDPTLTIDRHLEPQDPAPGAEVEVTLTLTNDGDAPLPDLRLLDGVPERL
#oth            ..11.11.111.1....11.111111.1..11.1....1..111111..1.11.......
rrnAC3541       :::::Q::IG::E:::::E::V::I::L::S::T:::::::::::T:::V:V::::::::
Hbo1563         ::VG::N:::E::::::L::T:ST:S:::::T::::::V::ETEE:V:::::V:::::::

consensus       AVVDGSPRLGTHLEAGASDSLTYAIRARRGDHAFDDCAVACRNLSGSAEFADAVEIDTGL
#oth            1.......1..1.11.1.1.1..111....1.1.1111.11...1.11.1111.111.1.
rrnAC3541       E:::::::F:::::::::::V::TVD::::::::T:V::V::::T:TV:::EQ:TVE:::
Hbo1563         :::::::::::S:GP:E:E:::::::::::S:S::E:V::V::::::::TR:::::::K:

consensus       DCEASVDDVPLSGQTISASGRIPTDAGGNGLAFYAIRQHQRSDPMRRVDWNRLAKTNELA
#oth            1.11...1...1...111...1...1..1.11...1.1.111...1....1.1...1..1
rrnAC3541       S:S::::T:::::::L:Q:::::::::::::::::::E::S::::S::::::::::::::
Hbo1563         :::G:::::::T::::T::::V:::S::E:VE:::T:::H:T::::::::K:Y:::G::T

consensus       TIEFRRERAATVICLVDSRVEAHVARRANAPDAVQLCAYAAQRAGEALLGMDNRAGAALY
#oth            .1..111......1...1.1111..11111.1..1111...111111..111..1.1.1.
rrnAC3541       ::::KET::::::T:::::--HS::GE::::T:::F::::::QV:S::::::::V:::V:
Hbo1563         :V:::::::::::::::V:::::::::EGE::::W:SK:::E::M:S::STG::::V:::

consensus       DAFPGQRYLQPKANRAQEQRARRLLEGVVSGKAEGPDASRDSWLFDRNQRRRNANSSTEM
#oth            1111.111.1.111.1.11.111111111111.11.111.11111.1.111.11111111
rrnAC3541       :S--:ET-:::S::::::::LE:F:K:::::S:T::SGT:::::::T:T:T:P:E:::::
Hbo1563         G::::::::E::TG:D:VL:::S:F:-----:::I:::::T----::::S:::V:-----

consensus       ADRYGIADGGDALATLDRRIPDDAQIAFCSPLLDDRAADAARRLAAHGHAVTAYSPDLAG
#oth            11111111111111..111..111.11.11.1..111111.1....1..1..111..11.
rrnAC3541       ::::::::::::V:::::S::SES:VV::T:::::::::::K::::Y:::::VV:::MT:
Hbo1563         ------------:E::LK::::::::::F::F::EDVVTD:::::::::S::::V:::::

consensus       GDSPGREIERIDRDARLRKLRGDDVRVVDWSPDEPLAAALDRAKARWAA
#oth            111..1111111.11..11.1.11....1.1.1...11.11..11..11
rrnAC3541       ::::::TV:::::T:::DT:::T-::::::T:T::::K::I::TE:::-
Hbo1563         -KT::G::SKFE::R:::::H:::::::L:::::::R::T:::::::S: