2 genomes BUD3181 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1761 - Hbo3459 - - - - -

Pairwise sequence scores
Consensus score	3586	rrnAC1761	Hbo3459
2936	rrnAC1761	3518	2064
2714	Hbo3459	2064	3448

477 symbols
consensus       MSANNTGETALERIGYRLAAWVERWMPSPFLFAIILSYVVFAAGIGLEGAGPAEMVGFWY
#oth            111111111111111111111...1........11......11.1111.11.11..11..
rrnAC1761       ::::::::::::::::::S::::::::::::::L:::::::L::V::T::::V:::::::
Hbo3459         -----------------M:SV:::V:::::::::L:::::::G::VV::TT::S::TY::

consensus       NGFWALLDFAMQMVLILMTGFALAYHPRVNAGIRRLTEIPNNGKQAVVLVGLISMLIAWV
#oth            1...11.1.1.......1..111....1.11..1...1..11..........11.111..
rrnAC1761       D::::F:T:S:::::::::::VV:::::::::::::::::ST::::::::::LT::LG::
Hbo3459         ::::V::::::::::::V::Y::::::F:QR::E:::S:::::::::::::::::V::::

consensus       HWGLGLILGAIMAREMGRQAAERDIDVHYPLLCLAGYLGLGLTWHWGIAGSAPLLLATEG
#oth            ....1..1..11.....11.1111.1....1..1...1.1.......11......11.1.
rrnAC1761       ::::S::::::F:::::KT:H:NG::::::V::V:::::::::::::LS:::::::::::
Hbo3459         :::::::V::V::::::::::T:::Q:::::::::::M:M:::::::::::::::MN:P:

consensus       NEFIQQGIIDDLIPASQTIFHPYGLILTGLGIAYAALVLYLIAPEGADARGITAYIPEDD
#oth            .1.11..1.111111.1.1....1.1.1111.1.111...111.111111...1....11
rrnAC1761       :::::::V::VVVS::E:::::::::::::S::::LV:::V:T:T:DQ:::::H::::::
Hbo3459         :V:VE::::S::::T:::V::::T:T:VVT::L:T::::::L:::P::TE::::::::SK

consensus       LFDSASDGGEDTSAVEMPSDTSGVTEKQTLAERINQSRLLGGIIALSGIALAASQFAQQG
#oth            ..1..1...111111111111111.111111.11.1..11....1.1.1.11111.111.
rrnAC1761       ::E::::::VE:T:----------:T::VP:::L:H::V:::::G:T::::V::::V:S:
Hbo3459         :::::V:::::V:S::::::::::::PT::S:M::::::T::::::::V:F:LYT::T::

consensus       IDALNLNIVNFGFLFIGIAIYMDPQAYREQFGDAATAAGGIVLQFPLFAGIQGMMARSGL
#oth            11..1..1...1..11.111.11.11.1.1.11.1.111....1..11...1...11...
rrnAC1761       ::::G:::::::::T:::F::::::T:::K::E:::::S::::L::F:::::::::T:::
Hbo3459         LS:::::L:::L:::L:L:L:TQ:K::Q:::Y::I:ST:::::::::Y:::I:::N::::

consensus       AALMANALISLSTEATFPAIAWITAATVNIFAPSGGGEWIIIGPPILQAANNLGVPAGQA
#oth            111..11.1.1..11...11..1.1.1..1.1.......111.111.1..11........
rrnAC1761       :Q::::::::V::PQ:::V:::L:G::::::::::::::::L:::::E::Q:::::::::
Hbo3459         S:T::ET:V::::::::::V::::::V::V:V:::::::TV::TTV:::::E::::::::

consensus       TMAYAVGDAHTNLLNPFWALPLLAITRIRARDMFGYAIAMLLALIPFLAVGLIFLPY
#oth            .1............1........1..1.1..1....111.1.1.1.....1.11...
rrnAC1761       ::::::::::::::::::::::::::::K::E::::::::::::T:::::V:FV:::
Hbo3459         :V::::::::::::Q::::::::G::G:::::::::GVT:M:L::::::::::::::