2 genomes BUD3183 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3544 - Hbo1560 - - - - -

Pairwise sequence scores
Consensus score	2729	rrnAC3544	Hbo1560
1911	rrnAC3544	2598	1079
1897	Hbo1560	1079	2608

375 symbols
consensus       MSPSTSDGHTSAVTGPTADRSLTRRMAAALALLVAIDIAAVAAAAYLLAPWLEPYRNAGA
#oth            111111111111111111111.1.1.111.1.1.11.111..1111.11..11.111111
rrnAC3544       ------------------M:T:::::LWT:L::::V:::V::T::V::T:::V:V:::V:
Hbo1560         :::::::::::::::::::K::V:E:::::::V:T::VV::::FG::V:::V:::LPS:T

consensus       AHLLFGGAAARIAWWIAIITAALGAFLLAQLRYARAQTLAAVDARIVGEDEHPALHARIQ
#oth            11111..111111111111111111.11.1...111111.1.1.11.11111.1..1.11
rrnAC3544       :::P::::S:::::::::L:P::V::VW:::::TS:::M:E:::::::P::Y::::E:V:
Hbo1560         PSV:V::V:---------:V:VT:V::::H:::::RGV::::G:KT:S:ST::N:::::T

consensus       RLAAQADLRPPRIAVADADVPNSLAIGGLRAATVVISRGLIDALDDDELDAVLAHELAHV
#oth            ...111..1..11..1.1.....1.1.11111...1.1..111.11...........1..
rrnAC3544       :::QL:::T::::::::::::::F:::T:GG::::V:E::LS:::G:::::::::::M::
Hbo1560         :::::F:::::EL::V:T:::::::V::P::S::::::::::D:S:::::::::::::::

consensus       ANRDATVMTLASFLPALANGEYDPLADLIPSMGGARYAIGAIALGFAYVMAAPRLLAAAF
#oth            1...........1..1.1....1111111.111.11.11.111.111..1111.11111.
rrnAC3544       :::::::::::::::S:T::::::::::L:--::S:::L:LV:::::::FS:-:V:::P:
Hbo1560         K:::::::::::V:::::::::STSDSV::::S::H:L::::G:FVL::::T:::SGT::

consensus       GGLSLGLEFLLLFAFTLLLGGVALGLLAAPAVVLGRRLSRARELAADRAAARATGDPAAL
#oth            .11.1111..11111.1...1.1..111..1...1.1...1..11..111.11......1
rrnAC3544       :S::FT:G::F:::V:V:::S::::VFT::V:::::S::::::F::::S::QL:::::::
Hbo1560         ::S:::-::::VVG::::::::L:::::::::::T:::::R:::V::T:G:::::::::M

consensus       AGAIRTLADGVDDRPRRDLRSAAAGLRGLCFLPHGFDTAAEDDELATIATRSHPPTEDRL
#oth            11.11..111111.111.1..111111......1..1.1.11.11..11.11..1111.1
rrnAC3544       V::LE::DS::::::GT:K:::Y::V:::::::Y::::::SS:S:::-E:::::::TE:V
Hbo1560         :S:::::::--EE:T::::::T:ST:S:::::::::S:D:::::K:::::QT::SV::::

consensus       ERLRSVAASLESGSV
#oth            .1.11.111..1111
rrnAC3544       :::Q:::R:::T:::
Hbo1560         :N::T:T:T:::---