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2 genomes BUD3187 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
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rrnB0177

 -

Hbo2349

 - - - - -

Pairwise sequence scores
Consensus score2243 rrnB0177 Hbo2349
1441rrnB0177 2214 568
1370Hbo2349 568 2054 

300 symbols
consensus       MTFRRLISDRALQRGDDREFGTLMFDARGNSAPAAGILLLRWRAGEILALYWIEIGTALA
#oth            1111111.1111111111.1111111111111.11.11111..11.1.11..1.111111
rrnB0177        ------M:PTT:::SM:::WS::::VIVS:TL::::VVFF::::S:::V:::::VVVMV:
Hbo2349         :::::::::::FES::EH:::VVSP::::E:::FF:::::D::V::L::V::L::::::L

consensus       AYSVAALFAQQPIVLDDRDFYIPGTGKREERNEDRWERDPAPVNRIKSFLPDVVRGRLPP
#oth            1........11....11.1..11.1.111.11.11.111.1..1111111111.111...
rrnB0177        :::::::::K:::::E::::::V:Y:::::L:::::SG::E::::::::::::::S::::
Hbo2349         G:::::::::L:::::G:S::L::::PDV::H:-K:::E::::E---------:P:P:::

consensus       IYRRNIRLVGRSLTILIAGAFILAFLGDASPNILAALRSPAIALGALAMCLSDLYRLRRE
#oth            ..1..1.1.111..1111111111111111111111.1..111.1111111.1111.1..
rrnB0177        :::::F:V:::::::MLFL:VLW:Y:::IVS:PV:::G:::VI::S::V:T:Q:VE::::
Hbo2349         ::P::::::---::L::::C:::G:FLF:::D::KS::::S:::T:VG:I:::W:::Y::

consensus       FFRENQYEDMSAYMTLEAAQRVVAFLIMAASAVVLLSIIGLLTLALLLDITQGEFVTSAS
#oth            1.1111..11....11.111.111.1111111..1111111.11111.111111.11111
rrnB0177        Y:VP:T:::W:::::V:::::::::Y::LGV:::PMT::S::VFG::::LVS:G::::::
Hbo2349         ::::K:::E:::::V::IPG:---::VF:::Y:::::TV:M::::SF:M:::T::-----

consensus       ISARAGIDLEQLAAGAIFSLGKAAVDWSRRRAENREDPDGLAGWFRPDNLHLREWEQERR
#oth            11111.11111.11111111..11.1..11111111.11.111..1.1.111111111.1
rrnB0177        ::GS:::::SV::PVV:::T:::V::::::TVGI:T:T:::V:::T:E::::::::::::
Hbo2349         --::L:FEF:::V:::MV-:::I::E::QF::::E:::T:F:T::::::--------P:E