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2 genomes BUD3188 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2452

 -

Hbo1464

 - - - - -

Pairwise sequence scores
Consensus score537 rrnAC2452 Hbo1464
318rrnAC2452 466 114
333Hbo1464 114 486 

68 symbols
consensus       MSHERGPMEPQGASSYDEDVPADAAAEDGLIARLRRHLRRWPRRYIEMRIDALDARWGDS
#oth            ..111.11111.1.11111..1111111.1111.1.1111.11..1...111111.1111
rrnAC2452       ::FPE::::SG:R::::::::::::DT:::FGP:::FSK::S:::::::V::::S:::--
Hbo1464         ::::::STG:::::-----::RPTT::T:V::::K::::T::D::V::::GTVT::YM::

consensus       TATKRTAD
#oth            11111111
rrnAC2452       --------
Hbo1464         ::::::::