2 genomes BUD3414 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3479 - - Hmu0910 Hmu0918 Hmu2474 - - - -

Pairwise sequence scores
Consensus score	2418	rrnAC3479	Hmu2474	Hmu0910	Hmu0918
1777	rrnAC3479	2462	1632	687	641
1829	Hmu2474	1632	2425	682	689
1066	Hmu0910	687	682	2480	755
1039	Hmu0918	641	689	755	2295

337 symbols
consensus       -MDDRNATRRQVLKGAGAAAAAAAG---CTGTQAAARRWRAVESPTGNTLTDAEMTAAGA
#oth            12323222113212232123222221113212221333.33.21..221.21113111.1
rrnAC3479       ::S:::::::G::::I::T::::L:GAALS::V:::GP:ES:::::::::H:V:F:::::
Hmu2474         ::F:DT::::T:::S:T::V::::V:::P::V:::E:T:T::::::::::F:V:S::D::
Hmu0910         MI:EH:VG:::F:V:L:::GTTL::::::QT::QTPHG:ID:DT::RMG::::V:SVD:P
Hmu0918         :------------------------:::V:TESSTQP:::T:S:::SK:::S:VW::::P

consensus       YAVGEAGIVLERTPDG-WRKVIDGGPTGNGNNLYAADVTDDGRRLWFVGSSGAIGEYDVE
#oth            2..112.3.12.22211.22.222..212213.211111...321.12.1..12.22.22
rrnAC3479       :::AGG:::::::ST:::Q:::G::::::::S::G:::::::TA:::::A::::::::::
Hmu2474         ::::G::V::::::K::::::L::::S:::::::G:::::::K:::::::::::::L:I:
Hmu0910         F::::S:L::T:NG:A::EA:VSD::::GE:P:A:V:A:::::Y::LC::::VV:R:::R
Hmu0918         L::::::T:VG:P:::D::V:::S::NARSAT:N::T:S:::E:S::A::::VL:LW:TA

consensus       SGVLTDHSAPMDKTNNFNDVSVSGEAGEENVYVANDSGELYYS-FENGACRTWEDVTKPG
#oth            1122212...221.111211211.211222111111..12222222113332223111.2
rrnAC3479       :::::N::::::V:::::::::T:S:::A:::::G:::KM:::::::::SE::DYT:-::
Hmu2474         ::::N:::::::V:::::::::T::::ST:::::G:::K:::::::::ETGS:::::-:A
Hmu0910         G:SV::L:::RQ::SSWT::A:::R:NG:T::LI:S::::LTGHWS::RV:WR:T::::T
Hmu0918         :ERKS:F:::DE::SSWCAITI:::P:::RLV:::S:::VVRADLDADQ:P:FGG:V:::

consensus       SGSAINAVDF-ADRSGHIVDGNGTVLVTRDGSTWDRIGIANANVNFTDVDADGGDDVWVS
#oth            1.1221.1.2221221121.1222.32221122.121.112.321111221223222212
rrnAC3479       ::::::::::HGV:::::::::KS:F::D::::::K::L:D:::::YG::S::P::::::
Hmu2474         ::::::::::FD::::::::::Q:::Y::::T::::L:::::DY::YG:::::F:::::A
Hmu0910         G:ESAS:::V:::GTVYV::TG:::-:RNS::R:TP:::RG:EGGL::IA:ID:NHADAT
Hmu0918         :::TLS:L:A:::SIVYGT:TS:N:YAL::DE-:T::::R::Q:::::LT:AQ-TGLF::

consensus       GDGGSIFRWN--GSNWTPTDAGDAGLRDIDVENDR--GLAVGGGGAIF-ALADARWTAEA
#oth            111.21121111121.222222221.12112231211121..21.3122223233.1313
rrnAC3479       :G::MV:H::::::E:::::T::::::::E:TD:DST:YT:::::KVY:::GGGD::PDE
Hmu2474         :G::::Y:::::::E:RR::N:::::::VE:::GE::::T::::::V:DRD:::G:A::Q
Hmu0910         A:D::::VY::::Y::LQLH:SEKT:HAV:RMGG::::::::NS:D:::::EENN::K:P
Hmu0918         ::::LVY:YDVPCR::::VR:APQT::G::A:T::::IV:::D::G:TRCTS:Q:::L::

consensus       TPTGANLRAVARGR---TDIAVGSGGTILER------
#oth            .21232.32111.31112.1...21.1.1.1221111
rrnAC3479       ::A:E::T::V::G::::::::::::::::K::::::
Hmu2474         :::::::K::V::D:::V:::::A::A:V::::::::
Hmu0910         :D:PKT:QGC:L::DTYS:V::::D::::::FG::::
Hmu0918         :E:ERV::S::L:P:::::V:::D::::V::RAEGER