2 genomes BUD3415 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0224 - - Hmu0591 Hmu0592 Hmu1603 - - - -

Pairwise sequence scores
Consensus score	4523	rrnAC0224	Hmu1603	Hmu0591	Hmu0592
3520	rrnAC0224	4530	3077	2496	2572
3432	Hmu1603	3077	4419	2459	2550
3271	Hmu0591	2496	2459	4611	2770
3324	Hmu0592	2572	2550	2770	4678

599 symbols
consensus       ---------MAADRAWWKEAVVYQIYPRSFNDSDGDGIGDLQGIIEKLDYVADLGVDVIW
#oth            2222222222332.3..1.........1..3.2....1...1.12111..212....21.
rrnAC0224       ::::::::::T:A::::::::::::::::::::::::V::::::::R:::::::::::::
Hmu1603         :::::::::::QE:T:::::::::::::::Y:A::::::::::V::::::::::::::::
Hmu0591         MSTNTLTTLENV::E:::::::::::::::S:T::::V::::::VD:V::IDS::::LV:
Hmu0592         VAVSETVERTRS::Q::E:::::::::K::F::::::::::A::T::V::LDA::::AV:

consensus       LNPVYDSPQADNGYDISDYRSIDDEFGDMADWERLLDELHDRDIRLVMDLVVNHTSAEHE
#oth            .1...1..13......1..22.3111.1.11.11.12.2.2.11..1....1....32..
rrnAC0224       :::::::::K:::::::::QT:Y::::T:::::A:VE:V:N::M::::::::::::DQ::
Hmu1603         :::::::::R:::::::::::::ET::::DT:R:::::I:A::M::::::::::::VD::
Hmu0591         :C:::G::NE:::::::::HA:M:::::::::::::::::::::::I::::L::::S:::
Hmu0592         :C::::::::::::::R:::::F:TY::::::::::A:::::N:::::::::::::::::

consensus       WFQRSRRGDPEYADYYHWRDGRPAEDADYDTDDGPADEVAPNNWDSIFGGPAWEYDEERD
#oth            ..12..1112..1.1.2..112221111111111111211....1.1...1..21111.3
rrnAC0224       ::RK::QR::::E:::I::E:GTD::G:---------P:P::::E:F:::S::::::::S
Hmu1603         ::::::::::::E:F::::E---T::GE-----------P::::::F:::S:::R:AV::
Hmu0591         ::::::::EG::::::Y:::::::T::::::::::::::::::::::::::::S:V:::E
Hmu0592         :::H::::ES:::::::::::::::T:::::::::::::::::::::::::::A:::::G

consensus       QWYLHLFDESQPDLNWRNEAVREAVYDIVRWWLDRGIDGFRMDVINLLSKTEGLPDGDPD
#oth            121...1.11......2.22..21221323..122........11112..22.......1
rrnAC0224       EYF:::Y:T:::::::::DS::TDIF:TIE:::EK:::::::::::::::V:::::::::
Hmu1603         EQ::::Y:T:::::::A:::::::::E::D::FQQ:::::::::::::::A:::::::::
Hmu0591         :::::::::N::::::::PT::Q:MK:V:S:::::::::::::AVSHM:::D:::::::E
Hmu0592         ::::::::::::::::E::::::D::EMM::::::::::::::::::V:::P:::::::E

consensus       SEWVGAEHFIDGPELLDYLTELDAEVLSNYDILTVGEMPQLTVEQAARYADADG-PLDMA
#oth            1221.2...32..2222..21.31211112122..1.112221.2.3312131112.112
rrnAC0224       ::::::::::::::M:S:::A::E:::::::VM:::::::::::S:LE:::T::::::::
Hmu1603         :::::S:::V:::::::::V::EER::::::G::::::::::::::RT::G:::::::L:
Hmu0591         GTPT:I:::SH::R:EE:::::S:D:::DH::T::A::GHTLI::::D:L:DEAIG:::I
Hmu0592         :GL::::::MN::KVH:::S::V::AIPDDE::::::T:GAG::D:Q:FVGE:::-:S:V

consensus       FQFQHTKLDYG-GDRWSVGDWDLPELKRIIARWQDGLADDGWNALYLENHDQPRIVSRFG
#oth            .1.2.22112222221111111.2.1.213311.22..22..12.112......3...1.
rrnAC0224       :H::::::::AD:E:::::::S::::::::G:::::::A::::T::W:::::::S:::Y:
Hmu1603         :H:::::::::PDG:::::E:::T:::A:TD:::TE::E:::::::W:::::::V:::Y:
Hmu0591         :::S:MGV:G::W:PET::E:::::F:::MSER::A:::R::D::F:G::::::::::::
Hmu0592         :::E:VNVGHE:::K::LE:YS:V:::ESL::::N::::E:::S:::S::::::T:::::

consensus       DPEAYRRESAKLLGTFLLTLRGTPFVYQGQEIGMTNADFESIDDLRDVDAINHARELIAA
#oth            .223.1.1..212..121.11...1....1.1.....111131111.1221121112223
rrnAC0224       :::N::::::::::::I:::::::Y::::::L::::::W:TM:::::::::::::::LDR
Hmu1603         ::DE::::::TM::::V::::::::::::::L:::::P:PT::::::::::::::::M::
Hmu0591         :-:::H::::S:I::::::M::::Y::::E:::::::::::L:EID:PQTVGRVEQY::D
Hmu0592         :DGR:::R::::F::L:Y::Q::::::::::::::::P:::KSE::::ES::FVE:A:ES

consensus       GAAESYDDVRDIVEYRTRDNARTPMQWSDDDNAGFTDGEPWIKVNPNYREINVARQRADP
#oth            23212.121122.2212..1.......1.232......1..122.11.321.112211.1
rrnAC0224       DGV:E::::K:::G:::::::::::::D:SK:::::::D:::Q:::::::::A:D:Q::V
Hmu1603         RDC:-::A::S::::::::::::::::::::H::::::::::DA::::STV::E:E::::
Hmu0591         :V:D::EEL:EV:NA:S::H:::::::::EPG:::::::::L:C:AD:T:::::A::D::
Hmu0592         ::::::E::::A::TVG:::::::::::::E::::::::::L::::::DA:::E:A::::

consensus       DSVLSYYRRLIDLRASRDVLVYGDFEDLAPDDEQVFAYTRTL----GDERALVVLNFSAE
#oth            2..221.11.11..32112.1..1121.1.212111.11.211111211.11...13132
rrnAC0224       :::Y:::Q:::Q:::D::::::::YT::L::H:T:::F::S:SADS:T::I::::H:DDA
Hmu1603         E:::::::E:::::S:TPT:I::E:L::L:::R::Y::E:RR::::E:D:IV::::T:GS
Hmu0591         A:::NQ::::::::Q:T:::::::Y:L:::E:D:LY::::::::::D:::::::::W:S:
Hmu0592         :::WH:::E:G:::GN::L:::::::L:::G:::::::::::::::::::::::::V:::

consensus       PATFELP-VEVDDATLLEGNYDAAPTDPSTVTLRPYEARVYRL----------------
#oth            2112221222221221131.11332.222212.2.1..2..222211111111111111
rrnAC0224       TE:LD:::::YA::::::::::CDD:::G::::A:::::::E:FD::::::::::::::
Hmu1603         A:SV:::::G:PE:C::-S:::EP:::L:GA:::::::A:::V::::::::::::::::
Hmu0591         :::::GSEI::::P:V:Y::::D:::E:TN:S:::W::V::::::::::::::::::::
Hmu0592         ::::AV:DDAG::LE:AI::LN:LE:PG:::E:D:::::::LTPATDTDRPTTTNSDST