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2 genomes BUD3418 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0020

rrnAC1522

rrnAC3461

 - -

Hmu2090

 - - - -

Pairwise sequence scores
Consensus score1222 rrnAC0020 rrnAC3461 rrnAC1522 Hmu2090
575rrnAC0020 1243 315 430 439
601rrnAC3461 315 1412 493 497
1004rrnAC1522 430 493 1386 921
991Hmu2090 439 497 921 1205 

206 symbols
consensus       --------------------MDTTPTP-RIELYVRSLLPDGAHQRQAAVIDRLQTLDDND
#oth            111111111111111111222121121212..1...12.111111.21.111122.2221
rrnAC0020       ::::::::::::::::::::::S:AN:V:V::F::::C:EA:T:Q:NY:L::::A:E:AG
rrnAC3461       ::::::::::::::::::MQGS:Q:DDT:A:::::::::::HT:Q:::::::IKG:S:T:
rrnAC1522       MQTSLTVSICVSRECRPIAMS:::::::H:::::::M::::::E::E::::H:::::E::
Hmu2090         :::::::::::::::::::::SD:::::H::::::::V:::::E::::::E::E:::Q::

consensus       AIEDFSVIVWGRQIAPRSAAARTEEGRYILNRVAEFKQWALSNNVSLESFYQDTEVDSEV
#oth            3121111211.1113232.211.11.222.1.112.21.122121..1212132312112
rrnAC0020       C:::L:ILI:::R:E::L:Q-::A:::HL:E:LSM:E::ERDSD:::DA:DWQHP:TNM:
rrnAC3461       VLS::::Q:I::::PSTP:E::::L:LFA::::SV:QE::KR:KC:::PAF:VRS::::M
rrnAC1522       H:DG:N:::::K::::Q:::::::::K:::::::::::::::::::::::::::T:::::
Hmu2090         :::::::::::K:VSRE::::H::::::::::::::::::::::::::::::T::IS::I

consensus       SDEAYRAIALPVMGLAEYAGSELQHVAPCTADDVVHTIMDR--------------LERLE
#oth            2223131131.122....3121.21.1.1.311212111..1111111111111111112
rrnAC0020       :::SVNV:T::SLA::::VDDD::::::::R:GT:YRVT::::::::::::::::VSH:A
rrnAC3461       :G:Q::::VF::QL::::T::::RC:T:H:::GETV:V:::LTMLEGEEELALSS:::AS
rrnAC1522       AES::D:M::::::::::D::::V::::::K:::::::::::::::::::::::::::::
Hmu2090         T:D-:S:MI:::::::::::G:::::::::NG::::::::::::::::::::::::::::

consensus       AGAPPA---------DDQEADRASVV
#oth            12311.11111111131223333222
rrnAC0020       DT:DI:::::::::::EVGHE:TV:Q
rrnAC3461       :AR:::QSDLPAADTV:EDS:PPLPE
rrnAC1522       ::Q::::::::::::L:::RGGV:::
Hmu2090         ::E::::::::::::IE:::SN::I: