2 genomes BUD3419 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - pNG3013 rrnAC2385 - - Hmu0213 - - - -

Pairwise sequence scores
Consensus score	2631	pNG3013	rrnAC2385	Hmu0213
1728	pNG3013	2687	1345	1391
2141	rrnAC2385	1345	2638	1861
2126	Hmu0213	1391	1861	2597

351 symbols
consensus       MITDPAVFEDEQLPRRLLHREAAVDHLSRAWEPALRGDQAHDVLIHGPQGVGKTALARHA
#oth            ..1121..1.121....1....11.1111.1..112.2..1.1.1...2.....211.21
pNG3013         :::KTH::::TYF::::R::::EM:FVTN:F::VV::Q::D:I:::::::::::IF::Y:
rrnAC2385       ::A:::::D::H:::::::::::::::::::::::G::::::::V:::P:::::::T::S
Hmu0213         ::::S::::::::::::::::::::::::::::::D:E::::::::::S:::::S:::F:

consensus       LRKLTRHADVQHAHVRCLGKSTAGVVRSVLHDLPGSDPASNMPREDLCIELQERVDQPTI
#oth            .21..2111112.1121...1...1..11.1....1..2212......11.1...12.1.
pNG3013         :NH::QRTA::::RIG::::::::I::A::E::::P::H:T:::::::L:::::::E:::
rrnAC2385       :::::G:::::T::::::::T:::::::::::::::::SV:V:::::::Q:::::TS:V:
Hmu0213         :Q:::::::IHS:::ES:::::::::::I::::::::::T:T:::::::::R::::::::

consensus       VVLDEADDLPATDALDRLADVDGLSVVVICHDDDQWLSRLDNRLRRRLLGAELALDRYGV
#oth            .1.....1..2.1..1..1..11..1.11...212...211221.1.1222122.1111.
pNG3013         ::::::::::F:H::::::::::::M::V:::::G:::HVNDSI:H:FV:NIVD:GT:::
rrnAC2385       :::::::G::S::::N::V::EN:::::::::P:E::::::G::::::SF::FG::::S:
Hmu0213         :I:::::::::::::::::::::::::A::::KE::::Q:::Q::::::LK::::::F::

consensus       DELADILEARARRGLPSGVVTREQLETIADEVAGVARRGIQALRQAALLAEERRHRRIRA
#oth            1.......1.122..11111111..111..11..1..21.11..1..11.1112.22.22
pNG3013         ::::::::E:RQV::QP::IDED::R:L::MT::K:::A:F:::A::E::HD::::Q::S
rrnAC2385       :::::::::::NL::::ES::::::::::::::::::N::::::::::R:::LQ:D::TD
Hmu0213         N:::::::::::::::::::::::::E::::::::::K:::S:::::::::::D:SE:G:

consensus       EDVADSLERARRRIREQNLESLPFHHQLLYELIRVGDRLAAGELHDRYEAVAEQAYRGRE
#oth            1.121.21..21211.21.1......111...1.1122.211....1.111.122.1111
pNG3013         ::ID:::D::DQ:L::EH:A::::::HVV:::V:RHGP::PS::::I::KT::SL::ST:
rrnAC2385       :::RE:F:::::H:::L::::::::::::::::::::::E::::::::D:::D:::::::
Hmu0213         D:::::Y:::Q:Y:L:::::::::::::::::::::SG:K:::::::::::::EV:H::G

consensus       QTPISERARRNKLSKLEAYDLIEVEGENRHREYRVRDRAVAADLELNHIA-
#oth            1...1..1..2.....12.1.1.11.1....2.1.2112122222112221
pNG3013         ::::G:::::::::::::::::::L:A::::::::C:::::S:::IAPS:R
rrnAC2385       ::::::::::T:::::VE:::V:I:::::::V::::::Q:V:QVL:::VI:
Hmu0213         L::::::S::L::::::D:E:::::::::::K:S:TETDIELSFS::L:V: