2 genomes BUD3421 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0610 - - Hmu0171 Hmu2136 - - - -

Pairwise sequence scores
Consensus score	1543	rrnAC0610	Hmu2136	Hmu0171
919	rrnAC0610	1605	480	548
933	Hmu2136	480	1453	602
1022	Hmu0171	548	602	1493

211 symbols
consensus       -MENYICPAEGCDYNEDGDKSLAAVRSHINALGDDAHHDWEALRAALEGQ-----DDDDD
#oth            112212..11....221221.1121.1.1.12111221.122111112111111122221
rrnAC0610       MK:P:Y::::::::GTES:::::::::::::::::--:::GS:KPL:HE:GESND:QP::
Hmu2136         ::TGP:::::::::::::E::KES::R::::KK:A::E:M:::::::M:V:::::----:
Hmu0171         ::S::T::ID::::SG:---:::GL:::S:SM:S:GK:::PKI:::V::::::::Q::ET

consensus       NQGDSDDDPPGTGGAAATEGDEDDDQQDAAVEQPETEQNAENDQPE----MDQSDEYEQQ
#oth            22111...........11.1.1.12.12221.12112222111.111111...11..1..
rrnAC0610       Q:::P:::::::::::GS:::S:::::TEG:::T::P::G::::QD:::::::::::D::
Hmu2136         ES:::::::::::::::::E::::E:GE:P::GVDSGTE:G:E:::EGDE::::::::::
Hmu0171         :EDS:::::::::::::::::::EG:::P:R::::::ETS:K:::::::::::TE:::::

consensus       IQQ-QQAEDQGENTNDSQQDGQNQQAQGQQDTGGSGRSGAVILAGTLLLGLAIALATGGD
#oth            21.11221222121121221112122122221111.211211121111.1122211112.
rrnAC0610       V::A:::N::PDDL:::S:S:GQ:GG:TS:T:S:R:VPVVPLV::I:::::LLVALS:::
Hmu2136         L:::TSG:SS::S::G:GT:D:DDH::----S:::::::::::V::V::AVVV::::SS:
Hmu0171         :E:::TS:EGS:::EEN:S::::::SG::P:::Q::P::L:::GA::A:::::L::::T:

consensus       SDDDQEPIEVEEESEAADPVADGEEADEAW-
#oth            11121112..22.222.1..21112222211
rrnAC0610       DQPTEVDS::T::T:Q::::::DP:::V:::
Hmu2136         :::E::::::--::T::E::D:::TPE:VF:
Hmu0171         :::::::M:::S:VSD::::EE::----G:V