2 genomes BUD3423 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0612 - - Hmu0170 Hmu2135 - - - -

Pairwise sequence scores
Consensus score	3638	rrnAC0612	Hmu0170	Hmu2135
1745	rrnAC0612	2498	1400	662
2947	Hmu0170	1400	3749	1685
2158	Hmu2135	662	1685	3306

492 symbols
consensus       VTTRIEYGSKDAADAARDRHEEYLCTDDDRRLKTVAYSDADTPDHVLDAERLEAEDSRGE
#oth            111111112111111111111111111111111111111111111111111111111111
rrnAC0612       ------------------------------------------------------------
Hmu0170         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2135         ::::::::T:::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       GSDGPGQVPLSDGERDRIDFGKARASVPHAKAVKGIARSEGVEDWVSYYDGTLTVDEHRE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC0612       ------------------------------------------------------------
Hmu0170         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2135         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       VMADASRESGKRTDEQESADEKAADAAQTAKGERCDHARGHCEAGDPEACEFLTETCGYD
#oth            1....1....1..1.1..11...11..11.1111.........1.........111.1..
rrnAC0612       -::::A::::S::A:-::VE:::GR::RA:QSSQ:::::::::N:::::::::QQS::::
Hmu0170         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2135         :::::::::::::::::::::::::::::::::::::::::::::::::::::::::Q::

consensus       DDEVQQLL-----DDDRAAANEQDELVTVGGDEYPEMELTPEVAGALRRSWNGYKAALGA
#oth            211.122.1111121.22222112111111.111111.111111...121.2..121212
rrnAC0612       ::::SL:::::::-::QRH:::::V:::::::::::::V:::::::::D::T::::GM:Q
Hmu0170         EE::::F:::::::E:H:DDG::T:::::::::::::::R:::::::::::G:::N:V:D
Hmu2135         F:D::EM:LAQRAP:::P:PSKPE:VEQ--:EAVKSE:::GKQK:::KQA::::LG::D:

consensus       LDDALADARNAVINARQAWRAINRIREANGQQPLHPNRLHTLLDALDDMPRSIPAVRTLD
#oth            111.1221121112.1.11.1..1...11..211.121.111112.1211212121211.
rrnAC0612       :::::TK::E:::::::::::::::::::::E:M::D::::::::::T::D:::E:::::
Hmu0170         :ET:I::::Q:::D:::S:::::::::::::PE:::::::::::S::S::G:V:I:K:::
Hmu2135         V::::ETLA:EWVH:Q::A:T::E:::TV::::::FEK:EGSQAD:M:LA:QMA:----:

consensus       HFAQE------ECADDQADEREPTRPDDAARRRQDLAGDDRDAEQAAPIEGADSFAEAEN
#oth            11212111111.2112221122122112222221222.2.2.212222212112222222
rrnAC0612       ::T:T:::::::T::E::::-----::QF:TEQ:GTL:I:T::::V--------------
Hmu0170         :::::PGGDRD:L::SELA::::::::P:D::PD::R:::::D:P:EV::T::T::SEGQ
Hmu2135         CY---::::::::HA:HS:HSH:VTQG:REHI::VV::T:S:EQGE::V:::::ST::::

consensus       AQLLAG-------AEDAQVTLAGEREADN-EPAPKAWAREGTTWTAGPRKIAADRAARND
#oth            21222111111111.22..1.2.12.221122212.122111.1.111212121222122
rrnAC0612       ------:::::::::EK::::::GD::G:::V:::::RQK:::::G::H:::L:SHQ:GK
Hmu0170         :::S::VSPEETPG::R::::T::N:D:AVG:L:S::T::::::::::Y:V:I:::::::
Hmu2135         E:V:Q::::::::::S:::D:S::::QQ::--QQT:L:V:AD:R::QG:EST:E------

consensus       WNVRLHGPAGPIDRAGNLPDAPEAEAVAMEITERDDPDEIGAENANETLQEAAAAAKQAA
#oth            12121211211212122.1.2221121122221121.11212212211212111211221
rrnAC0612       :::K:T:::::L:L:T::::PTV::T::VG::::VQ:::VTGH::DA::::::::::SE:
Hmu0170         :V::::::P:T::V:SG:::::::::::::YVDLI::::::FKST:::V:V:::E::K::
Hmu2135         ---------A:VN:G:L:A:------------:::::S-M::::GT:S-------TD:QQ

consensus       LHDDEGGIINYA
#oth            12.1.1.22212
rrnAC0612       :P:::::LME::
Hmu0170         :-::::::L::T
Hmu2135         F::P:Q:T:SEL