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2 genomes BUD3428 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0603

 - -

Hmu0179

Hmu2144

 - - - -

Pairwise sequence scores
Consensus score1822 rrnAC0603 Hmu0179 Hmu2144
630rrnAC0603 1859 558 591
1720Hmu0179 558 1811 1701
1773Hmu2144 591 1701 1824 

246 symbols
consensus       MNEQIMQRLREANTSRDNITNGDFSFSTGSPGQPTTVAEYQPKRALSVDATR--PFDLSL
#oth            11111.1..11.111111..111111.11.1..111111.1111.111111.11.11111
rrnAC0603       --MGL:D::AD:RRQPGH::PDEMDT:VN:Q::RSRIGR:RATT:HMLREG:QN:LKIAI
Hmu0179         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2144         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       VARETFTTDGNAGDAETFNLGHELIDSSVVTNSVVLYDGDNRVQPDSVDYAADQITYTDD
#oth            1.1111..111.1.2.1.212.111.11.11211.212.12111...1..12.2111..1
rrnAC0603       P:YQQE::NAT:D:S:Q:::::SVT:TP:TQPV::WL::EYYGT::::::DN:T::V::S
Hmu0179         ::::::::::::::G:::SVS::::::::::::L:::E::K::::::I:::G:SFN::::
Hmu2144         ::::::::::::::::::P:T::::::::::D:::M:K::::::::::::::::::::::

consensus       GTDNTLTIYYTSGAQALVEIQKVAPNGT--PDVLFSADMGMIHRRDQGKEPITVDADQSP
#oth            ...1.111..1.1.1.11.11.1.1.1111111111111.11.111.111.111111.1.
rrnAC0603       :::S:VH:::I:D:A:SL::R:A:S:ADTGSQRVYTGNL:LV:EAP:IEQ:EYLRLN:T:
Hmu0179         :::::::A:::::::::::L::::::::::::::::::::::::::::::::::::::::
Hmu2144         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       LHPFVPADFTLALTITAPYTVAFATDTNGSGTEVVATNALTDLPVRGAEGPIDGLKQAVA
#oth            ..11111.1.111111.....111.111.1...111....111.1111111.1..11...
rrnAC0603       ::NW:GT:M:VDVYLD:::::RW-:::::D:::--P::::LHV:AMVGQSE:Q::TS:::
Hmu0179         :::::::::::::::::::::::::E:-::::::::::::::::::::::::::::::::
Hmu2144         ::::I:::::::::::::::::::::A:::::::::::::::::::::::::::::::::

consensus       TDAARR
#oth            1.11.1
rrnAC0603       A:MG:Q
Hmu0179         ::::::
Hmu2144         ::::::