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2 genomes BUD3429 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0348

rrnAC1392

- -

Hmu1196

- - - -

Pairwise sequence scores
Consensus score3227 rrnAC1392 rrnAC0348 Hmu1196
1565rrnAC1392 3003 1184 1164
2635rrnAC0348 1184 3236 2137
2505Hmu1196 1164 2137 2855

433 symbols
consensus       ------ASTEFATGQATADSGRAAARDAIREARARIDADRPDFCQIFCSPAFDADAVLWG
#oth            11111122122211222222122122212221222221222111121212221221..1.
rrnAC1392       MPSQSD:::VV:::TSV:TT::R:G:E:TST::D:L::::V::::V:S:TG:::E:::A:
rrnAC0348       ::::::MT:::G:::::G:::D:::M::::::M:D:S:SE:::::::::::Y:Y::::::
Hmu1196         ::::::--------------------------------------------------::::

consensus       ARSVVGSDTEVVGCSSSGEFTEAGSGAATVTVGIVASDSMRFFTALSTGLSADHRRCLFE
#oth            2111.111.111..111.1...2112221.1.12.2...11.11211.1.1112211111
rrnAC1392       VTAL:DDE:A::::TAG:T:::ERAMD:G:A:TL:T:::F::D:::A::::ENT:GAVRD
rrnAC0348       ::::::::::I:::::::::::T:::NG:::::V:S:::::::SSI::E::::PE:::::
Hmu1196         I::::::::::I:::::::::::::K:E::::::::::::E:::T:::::G:::K:::::

consensus       AVHDLPENDAPAIDQYPHRAAINLHDGIAGIGNQITRLTEQYLDDDQIPIVGGSAGDDLR
#oth            ..11..1222121121.112211....2111.2221211111.11222121..1.1.1.1
rrnAC1392       ::RS::::----:EE-:YQS:LV::::L::V:E:LSLSVQRR:G-PYVEFA::A:S:G::
rrnAC0348       ::::::ASGD::V:G::::TI::::::M:::::KV::::::::::EET:V:::::::::Q
Hmu1196         :::::::P:::Q::::::::V:::::::VS::DE::K:::::::::::::::::::::::

consensus       LEQTHVFCNARVEEDAVVLALIAAEDALAVTVNHGHEPISEPMAVTRAEGSTVYELDGRP
#oth            112.1..1122.12...1.2.112112221......1....112..111.11.1..1.1.
rrnAC1392       M:S:P:::D:S:V::::::V::SGKKRPVI::::::T:::::WE::DVS:NV:H::N:E:
rrnAC0348       :Q:::::R:D:::T:::::T::::::::P::::::::::::A:T::::::::::::::::
Hmu1196         ::E::::::GQ::S:::A:::L:S::PF::::::::::::::::::::::::::::::::

consensus       AFEAWRDAIRDDAAERYGIDVDDLDAGSEELRMLLGRYELGIESEPDADADGIASRIRDF
#oth            ...1.1..112112.211.1..1121..11121.111.11..111122112221111221
rrnAC1392       :::V:K::V::HV:::T::A:::VPV::A:::K:MVA:LF::DQG---------------
rrnAC0348       ::::::::::E::M:T:D::::E:E::::D:V::::::::::::::ES::::L::::KT:
Hmu1196         :::::::::QT::R:S::::::::::::::FL::::::::::::::::::QS::::::::

consensus       IASALISTEGYNIRWPGRTANTDGALDFAVDIAEGTELRVTHSNKADQVAAVENAAANAV
#oth            2212211111.1....1212212.2.2.1.112...11111.1112..121112..21.1
rrnAC1392       --------:T:K::::RTAIEET:::Q:::::P:::V::IM:G:R:::I:SA:Q:::D::
rrnAC0348       :E:K::::T::::::::H:TD:E:P:::::TVS::::VV::::::S:::Y::R:::N:::
Hmu1196         V:::F:::::::::::::::::::S:G:T::::::::::::::S:P:::S:::T::S::A

consensus       NELRGGAVAGGFVYDCACRAMILGDDFDDAVDAIHSAIDAPFAGFETYGEVCSADEDYTG
#oth            21.21121..1........1111111.11...2.21211..1........1.1111111.
rrnAC1392       S-:CD:NI::A::::::::QILFD:A:SS:::G:T:TLS::V::::::::L:MQAGQLS:
rrnAC0348       ::::::S:::::::::::::::::E:::::::T:::::::::::::::::::::::::::
Hmu1196         D::G:N::::::::::::::::::::::::::::SRS:::::::::::::::::::::::

consensus       YHNTSAVIFLFPE
#oth            1...12.2111..
rrnAC1392       F:::TT:L:AL::
rrnAC0348       :::::S::L::::
Hmu1196         :::::::V:::::