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2 genomes BUD3430 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0604

 - -

Hmu0178

Hmu2143

 - - - -

Pairwise sequence scores
Consensus score1201 rrnAC0604 Hmu0178 Hmu2143
335rrnAC0604 1328 327 334
1170Hmu0178 327 1199 1161
1186Hmu2143 334 1161 1205 

176 symbols
consensus       MSESL-TNLGSAKVDATEETNIPDT--DSTILTWSPVDGLVIEIDNHVYGG--SGVPIYA
#oth            ...1.1111..11111.111.1.1111111..111.11.111111.1.11.111.1.1.1
rrnAC0604       :::D:FASE::TAEAV:VAQ:A:ASPRPTP::EIT:ER:QFLRFL:R:AQ:EQD:M:V:M
Hmu0178         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2143         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ELKDADGNDLPRDTEVILRWDTPSRDQPMIVSERLSNIRQYRTLSLKEQQNEEYREQTRT
#oth            1.1.11.11..11.11211111111111.1...1.1..1..11.111..1.111111111
rrnAC0604       D:R:SN:DK::TS:SLYFAVEPSGHESA:K:::V:K::S::VK:GIS::R:VDNIDSVKI
Hmu0178         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2143         ::::::::::::::::F:::::::::::::::::::::::::::::::::::::::::::

consensus       ELN--------GDGLI---VLDFEEVQVAIRSSAQIDWDNSRLEIDRKAVTVRAED
#oth            ..2111111111.112111.1.111111112.12....11.111.111..111111
rrnAC0604       ::QAPENAPNG::SVPKVD:R:IDTLYLMCD:P:::::AQ:EVY:ESN::EQHGRR
Hmu0178         ::K::::::::S::::::::::::::::::N::T::::::::::::::::::::::
Hmu2143         :::::::::::::::V:::::::::::::::::K::::::::::::::::::::::