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2 genomes BUD3431 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0606

- -

Hmu0175

Hmu2140

- - - -

Pairwise sequence scores
Consensus score2170 Hmu2140 rrnAC0606 Hmu0175
1189Hmu2140 2139 808 888
1559rrnAC0606 808 1904 1352
1778Hmu0175 888 1352 2229

285 symbols
consensus       LAELFTRR---PREDSAVNLALAAASGWGKSYHAQATMESNAGAYDAVVVLDYCAEYRGL
#oth            22222221111212222111222121111111221121...122.11111...11.....
Hmu2140         V:GW:VS::::T:GVWG:::L:::::::::::VC:::T:::L:E::G::L:::KD:::::
rrnAC0606       --------:::--------------------------:::::KD:::LA:::::::::::
Hmu0175         :P::W:::LHE::::::::::FI:Q:::::::::::W:::::M::E::::::::::::::

consensus       VKAGLARHLIVGPVE-EQWSVQDWRALLRQNPYVVLERHKAHLGTDRWRAVCTRIASALR
#oth            ..1.2.2.1.1.1..11..11121222111.111..1..12111111..21112121.1.
Hmu2140         ::::K:K:W:A::::A::::TDHF:Q:IE::GN:::A::-S::SPEQ:::::AKAI::G:
rrnAC0606       ::::V:D:::::::::A:::::::M:V::A:::::::::::KI::::::EIA::::::::
Hmu0175         ::E:::::::::R::::::G::Q:QTF::::::I::::::Q::::::::D:::T:SK:::

consensus       RLDRDQLIVADEAHFVAPQRAKLPDPIKELATTGRGAGTSTIWVTQRLAEIDKTILTQCQ
#oth            .11111.212.....1.1.22..121..1.......1.1.11.1...21.111..11..1
Hmu2140         :SSLSV:W:I:::::::Q:Q:::L::::G:::::::E:Q:S:::::::S:LAE::IA::T
rrnAC0606       :::::::V:V::::::::::E:::K::::::::::::::::M:::::T::::::::::::
Hmu0175         ::::::::A::::::I:::KQ:::QA:::::::::::::::::I:::P::::::::::::

consensus       ARMVGGFDGD-DLDAIGGSIEYPANLHRKGADPAPSTLPDELLPDDRERPTSVRKHEDDE
#oth            .111.1111211122222211..22..22122121111.11.1121111.1.11.12111
Hmu2140         ::KL:::ES:R::SK:::VVD::QD:::S:GHRV:G-:::D:HA::-GG:V::::WT:GD
rrnAC0606       :::::::::G:EIGPLST::::::E::DPR:::::::::E::::SG::::::LQ::KN::
Hmu0175         :W:::AL::S:::::VKPY::::E:::N::TS:PA::V::::::P:::::::::::::::

consensus       GNTIGSEWIYSDDDGNRRRVNTANVDMASTHHGSEGNDLNPPEYA
#oth            1212.........1.221.11121.2.2.1.2.11.11111.112
Hmu2140         -IVT:::::::::S:TV::M:S:::::D:E:V:AP:KSIKM::--
rrnAC0606       :Q:V::::::::::::::::D:GG:K:S:::Y:::::::::::::
Hmu0175         :::::::::::::::EKK::::Q::T::::::::::::::::S:S