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2 genomes BUD3433 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1132

 - -

Hmu1444

Hmu2721

 - - - -

Pairwise sequence scores
Consensus score1222 Hmu2721 rrnAC1132 Hmu1444
607Hmu2721 1275 325 320
774rrnAC1132 325 1183 624
853Hmu1444 320 624 1225 

160 symbols
consensus       -MGQAFG-EKPSDAHVIWRN-GGRNRGKKKFDFEYLELWAAHFGVDFERRTRVDHDRADE
#oth            111221.121..21..2.2211122211111.111..1..111.1.21211...11.1.1
Hmu2721         MFD:HL:D:R::QY::L:D-::::S:SDPRI:VRL::G::RKW:Y:VD::R:::S:::::
rrnAC1132       :::SV:::S:::E::::::S::RN:D::::::::::::::::::::::QW::::::::::
Hmu1444         :::G::::K:::::::V:T:RD:EGE::::::::::::::::::::Y:T::::::E:S:Q

consensus       PREQCACAFAWEAIEAETLSLGDREWTMGRQRTPRTFIEIDECGDARLAGWASERTLDVR
#oth            ..1.2222.212222211112..2.1.1121.1.1.12.1.12.22.122.2..211111
Hmu2721         :::::RI:::FGE:VE::::Y::::Y:FTTD:::A:YF:L:::::::::T:::::::TL:
rrnAC1132       ::::F::V:R:SKSGGQE::V::E:::::S::K::::V::::E:VV::R::N::T::::D
Hmu1444         ::G:HVVI:E:::L::::ME:::T:::::::::::::::::SH:EG:IKS:S::IVV:::

consensus       ELRLDGRALRLRTA-AGGKKAIDARKLSARGDRTSERLTG
#oth            ..211122121212122121221211.1222221122222
Hmu2721         :::I:::D:VFDAVFEP:PGRVHGQW::TTV:Q:RYW:::
rrnAC1132       ::V:KKTV:K:K:::D:TV:KL:V::::K:PET::S----
Hmu1444         ::W:::P:V::::S::H::::::::::L:D:K:E:::SVS