2 genomes BUD3434 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0582 - - Hmu0190 Hmu2163 - - - -

Pairwise sequence scores
Consensus score	1407	rrnAC0582	Hmu0190	Hmu2163
404	rrnAC0582	886	304	334
1220	Hmu0190	304	1454	1114
1274	Hmu2163	334	1114	1415

191 symbols
consensus       MTVTQQIWDGDDCPRVLCDGTLQQDEAAVECSECGETWSQQTADSEHLLISRAGKIVKRK
#oth            .11112111111111111111111111111111111112221221111111111111111
rrnAC0582       :SL---------------------------------------------------------
Hmu0190         :::::K::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu2163         ::::::::::::::::::::::::::::::::::::::THH:DE::::::::::::::::

consensus       QRVLPDGGEIDAESDRVDPERLPDTYTPAYVDVRGQGPVYVANYETLSSGWLSLTEWRGR
#oth            11111111112211.11...1.11111..1...1.1.1...11111111..11111.1.2
rrnAC0582       -------------A:NP:::N:TNADK::V:::D:S:N:::VSAKVREN:::W:KQ:D:Q
Hmu0190         ::::::::::EP:::::::::::::::::::::::::::::::::::::::::::::::T
Hmu2163         :::::::::::::::::::::::::::::::::::::::::::::::::::V:F::::::

consensus       RGKLPPHRVGGVREVRTERYDQADEERRYMKGKRVADEDRRRRARP-------DDGAGKA
#oth            22......1111111.1.2.1212122212121.11.112121.1111111111.11111
rrnAC0582       TF:::::::NA:QRI:K:::GE:GSSG--::PQ:IE:::W:::::EMTSGTTDV:::DE:
Hmu0190         :T::::::::::::::::T::P:P:TD::TRT::::::Q::EQ::::::::::::AG::T
Hmu2163         E:::::::I::I::::::H:::S::::V:V:::::::A:DLD::Q:::::::::::::::

consensus       VVADD------
#oth            ..111111111
rrnAC0582       :::::::::::
Hmu0190         ::DGHSIEIDA
Hmu2163         :::::::::::