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2 genomes BUD3435 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2290

rrnAC2398

 - -

Hmu0204

 - - - -

Pairwise sequence scores
Consensus score545 Hmu0204 rrnAC2290 rrnAC2398
318Hmu0204 594 291 296
514rrnAC2290 291 547 496
523rrnAC2398 296 496 548 

82 symbols
consensus       -----MDRILSYGLLGVIGVSASTIAAAVIGSPLPVVSPTVVAGGVIAAHHAQQKDTAAG
#oth            111111.11.1...2.1....1.......1.1.1...1.111.11.1....111..1111
Hmu0204         VILVRL:TL:G:::::T::::::::::::V:Q:F:::V::IF:AA:V::::VRT::SDPS
rrnAC2290       ::::::::::::::V::::::::::::::::::::::::A::::::::::::::::::::
rrnAC2398       ::::::::::::::M::::::G::::::::::::::::::::::::::::::::::::::

consensus       ADD-QEARASVEQVETDGGREQ
#oth            1.11112121111.11...111
Hmu0204         D:QLDD:TGDAPA:A:::::Q-
rrnAC2290       ::::::G:T::::::::::Q::
rrnAC2398       ::::::V::::::::A::::::