2 genomes BUD3439 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - pNG4004 rrnB0115 - - Hmu2290 - - - -

Pairwise sequence scores
Consensus score	1399	Hmu2290	pNG4004	rrnB0115
723	Hmu2290	2169	572	426
1147	pNG4004	572	1371	912
1019	rrnB0115	426	912	1085

299 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hmu2290         MLDDRADVDDPQQDWGDYLLYRDDLPERVQRGLEETDFQNWKTTDRGRGIVMLSSGTDCY
pNG4004         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnB0115        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ---------------------------------------------------------MLI
#oth            111111111111111111111111111111111111111111111111111111111212
Hmu2290         QDRRAAQITRGCVHELIEHDIPTRILTRSPNVTRDIDLFKQANGSLTVGSSIPSFDTS::
pNG4004         :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::V
rrnB0115        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::---

consensus       SSAEPNAPPPMARWQALNELQQAGVPRFVSMSPTYPTMGEDDFHELLSYFRALGEVVVFH
#oth            1222222222121121121122111221112111111..11.1..1..1.1.1111....
Hmu2290         :VL:::::::::::E:::::FK::::::::F::::::::RE:I::A::W:S:IDPE::::
pNG4004         :::LSISSST:T:::::D:::::::SV:::::::::::::::::::::::::::::::::
rrnB0115        -------------------------------------:::::::::::::::::::::::

consensus       EPINPRGANFQQCLTAAEDAGYDDVVDELQQLQDSHQYWVEYALEQLNTVQQVATRFDGL
#oth            .......1..11.11.1121.111112.1112.11111..1...1.111.11...1.111
Hmu2290         :::::::I::EM:IE:L::E:LESEA::FRK::RQGK-::D:::D:IEM:RD:::H:ENI
pNG4004         :::::::::::::::::KE:::::::T::::M::::::::::::::::::::::::::::
rrnB0115        ::::::::::::::::::Q:::::::E::::V::::::::::::::::::::::::::::

consensus       DIHSWPDDELVRSTSGQLRSKLTAMQQAVSPESFSERATDASAAQSELARDGEAIDQLI
#oth            21.1..111.111.1.1111.11111111...1.1222122122112122222221212
Hmu2290         T::T::GRD:IEA:N:TQQR:FKQ:RRQI:::P:A:-----------------------
pNG4004         E::::::::::::::::::::::::::::::::::GKQ:GT:::::G:TGQKG:L:::L
rrnB0115        :V::::::::::::::::::::::I::::::::::T::::::PE:::::::::S::H::