2 genomes BUD3441 2 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0688 - - Hmu0880 - - - -

Pairwise sequence scores
Consensus score	3085	rrnAC0688	Hmu0880
2667	rrnAC0688	3035	2059
2477	Hmu0880	2059	2832

394 symbols
consensus       MRGSWLSQTRCGGRLPDGTPHRRCRLMSDWADPDALDLSDGETFASALDRADTREKGHFF
#oth            11111111111111111111111111.1..1....11111111.1.1....1......1.
rrnAC0688       :::::::::::::::::::::::::::T::::::::::::::::D:L:::::::::::::
Hmu0880         --------------------------::::T::::--------::::::::E::::::Y:

consensus       ERFAEGDEIAHDPGLALDRHGNERWMGQTLNHDPAYWRADTARERDFEERPIHPDYLLAC
#oth            .1..1.1111.1...1.111.1.1..............1........1.1.1........
rrnAC0688       :F::::::L::::::R:TH::S:Q:::::::::::::::::::::::::::V::::::::
Hmu0880         ::::V:ET:E:E:::::::P::::::::::::::::::T::::::::P:P::::::::::

consensus       VMGATVEDLSEKGGYFLGRDDLRFHQPVLAGTEIRARSTVEDTATSNSRPDYGIVTWQTA
#oth            ...1...............1.11..1..11..11111...11.1..1...1......1.1
rrnAC0688       :::I:::::::::::::::::VT:::::T:::PLSVT:::V::K::S:::Q::::::E:E
Hmu0880         :::::::::::::::::::T:::::E:::P:::::::::::S::::::::::::::::::

consensus       GRDAETDETLVSYRRTNMIPRREAAAADGGAVGDDDQTAEDGASTRMLPDTLIAPDGEHF
#oth            .1.1..111....1....1...111.1...1.1111111.1.11111....1.1...11.
rrnAC0688       :::R::G::::::::::::::::P::T::::::EQ:---:::P---:::::P:S::::Y:
Hmu0880         :Y:::::SV::::E::::V:::T:T:::::Q:T::E::::E:::::T::::::::::P::

consensus       EDFRAALDRVADDENAAVAYRHERGRTMDDQLVAGLPLATLNTARQHHNRDAMADSPSGD
#oth            ...1...1.11.111....................................1........
rrnAC0688       :::Q:::E:-::T::::::::::::::::::::::::::::::::::::::E::::::::
Hmu0880         ::::::::::G::PD:::::::::::::::::::::::::::::::::::::::::::::

consensus       IVAYGDVTRSVALAHARSDEATYRERAFADEQFHDFVTLGDTIYGFTRVLDADPDAGPER
#oth            ..........................111..1..........1.......11...1..1.
rrnAC0688       ::::::::::::::::::::::::::R:::::::::::::::V::::::::C::::::::
Hmu0880         :::::::::::::::::::::::::::YH::S::::::::::::::::::E::::P::P:

consensus       AGAVTFEHVAFNQDRRPVYSGRRTALIDSRQRDQ
#oth            ..1........1..11..........111111.1
rrnAC0688       ::::::::::::::QT:::::::::::---:::T
Hmu0880         ::E::::::::D::::::::::::::V:::HP::