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2 genomes BUD3446 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0948

 - -

Hmu1761

 - - - -

Pairwise sequence scores
Consensus score4838 rrnAC0948 Hmu1761
2499rrnAC0948 3767 1041
3380Hmu1761 1041 4420 

656 symbols
consensus       MVPTHRTAARTNAPTRQLLIVATCVVGLLVAAAAMPATAPQPTPPEFLSGESDCQILFSE
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC0948       ------------------------------------------------------------
Hmu1761         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       DPVAGHELTTTVLYDEEPVSDSPMWFNGERVGRTDEDGRVVGTVPYEQTLQVRVELPGGG
#oth            111111111111111111111111.11.11111111111111111111111111111111
rrnAC0948       -----------------------::PS:--------------------------------
Hmu1761         :::::::::::::::::::::::V::::::::::::::::::::::::::::::::::::

consensus       SCEASIDAGDSDAPRQTVDRSGLGVAALDGVAQQAADNDSGAYRVAGRINLSLDEQPYPG
#oth            11111111...1.1111111111111111111.11.1.11.1.1.1.111111111....
rrnAC0948       -------::::T:T::----------------:T:::::T:Q:::::SV:VT:LGE::::
Hmu1761         :::::::T::::::LK::::::::::::::::::Q:Q:G::::P:R:::D::V:::::::

consensus       ETTPLRATIDGNPVANATVSHDGRIIGRTDADGQIQIRAPIEDDRTLAVHVERGAFEREA
#oth            1.11.1..11.1..11....1..111....11.111111.11111.11.1.1..1..111
rrnAC0948       S:V::V::V::V::R::::::::D:V::::TT::S:LTV:--:TD:T::T:S::E::GT:
Hmu1761         :::T:::::Q:::::D::::V:::T::::::::T:E::::::G::::T:::::::::::T

consensus       RIDVLRLDARIRPAALLALPGDNAAVNARRNDRAAKNATALLGDQRRGRTDADGHVAMSL
#oth            111..1.111111111.11..11.1.1.11111111...111.11.1.1.1...1.111.
rrnAC0948       :V:::N:HV:VM::KT:PV:::S:::::T::GE:V::::VT:::::::T:G:::T::V::
Hmu1761         E:V::::::T::TD:::::::Q::T:V::LG::P:V:::::V:GE:L:::::::::E:T:

consensus       PANPSARLTAATARQTARTPLLDAFAGTILLSSVLLLATLALIAIAAAGYSIAGARGIAI
#oth            ..1.1111.1..11.1.1.1111.111.111111111111111111.11.11111..111
rrnAC0948       :::::LTV::::D::::::T:W::YI::VVV:::::VT:VVT:::::LL:TPRV::::GV
Hmu1761         ::D:T::::V:::D:V:T::V:L:::P::::T---V::V:::VGVP::::::::R::V::

consensus       GSALADSLLAIAYLFERDGRAIALTVVSLAALAHLAADALSAGQASAYAAKNAARALAGW
#oth            111111.111111111.1.11...1111111.1111111.1111111.111111111..1
rrnAC0948       LW::F:::FF:GV:W::::L::::::::V:::Y:YR:::::G:::V:::V::SGKM:::Y
Hmu1761         ::GV:V:V::L::V:L:F::T:::----:GS::L::VVG:V:FLR:D:S:VE::::T:::

consensus       FARLGRRLARDALWLSGRIEAALGSIERRLARRLAALLAPDALPLADAGLSRRFQRWLRS
#oth            11.111111111...1..1..111.11...1111111111111..111.1111111..1.
rrnAC0948       V::VVQLSR:T::::V:::::M:-::G::::I::::W::--S:::TVT:::::::Q::::
Hmu1761         :R:::::::S:G::::::L:::V::L::::R:LWDR:MG:::T::::::------:::T:

consensus       AGARAIALARAETTPRRILARGFSCVVVILSYVRWGTTGAAVAVAGVGLGAVSVYTSGLT
#oth            111.11111..1111111111.1.1111111111.1111111111111...111111111
rrnAC0948       ::Y:::TV::::::::::VTL:::::::::::::::::::::::::::::::::::::::
Hmu1761         LP::LL::V::-------::::P:----------:-------------:::---------

consensus       DDSDRDDAAGESGDADSVTDSSDGDESALPRRAQLRRIWRAFARRVAPEHWRRRTAGEVS
#oth            .11..111.11..11111111111..11.111111.11.....11.1.11.11..1....
rrnAC0948       ::T::PT::SS::PSE::::::::::::::---S::D:::::::H:V:G:::T::P::::
Hmu1761         :E:::::L::::::::--------::TT:S::::F::V:::::G:::::T:P::::::::

consensus       RAAIDRGLPRAPVRALTDAFRAVEYGDQSLSDGRRARARAALDAIVSADDEQEDSA
#oth            .1...1..111..11..11..1....11.11.11111..1.11111111.111111
rrnAC0948       :::::S:::::::E:::E:::D::::G::-::S::EQ::N:Y::L:::S:::::TE
Hmu1761         :R::::::SPE:::E:::T::::::::E::T::QV:::::::EE:--R::SEGG::