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2 genomes BUD3459 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC3204

 - -

Hmu2560

 - - - -

Pairwise sequence scores
Consensus score1478 rrnAC3204 Hmu2560
1172rrnAC3204 1409 786
1092Hmu2560 786 1387 

187 symbols
consensus       MDRNRRDFLAALTAAPTGGIAGCSGDGGDSDESSPTATATATDTPTRTATATPTDSVPTA
#oth            1111..11.1..111111111..111..1111.1..1.1...111.1.1.1....111.1
rrnAC3204       ::::::Q::G::::VV::T:::::--::::G:::::::::::QVS::::::::::::T:S
Hmu2560         --MD:::Y::::VT::VV:LT::T::::TT:T:T::D:P:::::::P:D:P::::T-:::

consensus       TDTATPTDTPTPTDTATPTETPARTGTSVDAEQEVAVAPEGRLRFAPESFEIPAGETVRW
#oth            .1.1...1.....1.1.1.1.1.1.111111111.1...1.111.1..1..11..1..1.
rrnAC3204       :E:::::E:::::E:::S:::::S:::::::::::::::-:SFS::::T::V:::S::L:
Hmu2560         :::P:::::::::::P:::P:V:::---------:T:::::::::S::::::S:::::::

consensus       VWQAGGHNVAPDATPDGSDWSGTPGDDGKTYGSGYEHAYTFETPGEYEYHCVPHQGIGMT
#oth            ..1......1111..1....1....1.11..1...111....11.1...1.....11...
rrnAC3204       ::E::::::KST:::E::::T::::::::::S::::Y:::::V::::::::::::S::::
Hmu2560         ::::::::::::T::::::::::::S:--::::::T:V:::::T:T:::Y::::::S:::

consensus       ASFEVTE
#oth            1..1.11
rrnAC3204       G::T:::
Hmu2560         :::::V-