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2 genomes BUD3465 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1422

 - -

Hmu1730

 - - - -

Pairwise sequence scores
Consensus score2611 rrnAC1422 Hmu1730
1422rrnAC1422 2066 702
1891Hmu1730 702 2483 

350 symbols
consensus       VADLSRLRRRCRSLGDDRAQVILVAAFVMAVTFVMLALVVNSAIFTENLASRGETAGSDD
#oth            111111111111111111111111111111111111111111111111111111111111
rrnAC1422       ------------------------------------------------------------
Hmu1730         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ALLMRAMIEANIGQAIEAANRHNASDQSALATSLRESVRTLSAQSEAQRASGGKLVNVAG
#oth            1111.111.111.11.11..11.1.1111.1..11...1.1.1111111111.11.1.11
rrnAC1422       ---::::V::::::G:V::::Y:Y:T::::E::V::::::T:T:T:R::VTS:T::::TL
Hmu1730         :::V:QS::QST:H:::Y::T:::::TTT:::::D:::G::::L:G:HH:::::V:S:::

consensus       AGDIENGTRIADDAPGGSLFENASEGNATPSANWMVRERVTRPADGTAATRAFRINASQL
#oth            111111...11111111.1..1111.1..1.11.1111111.111.111..1111.1111
rrnAC1422       ::SPTY:::::QTNT--::::S---:E::::::::::::::::G:::N:::R:V:::T::
Hmu1730         PT:::::::VR:::::::S::::::::::-:VD:-------:V:Q:V:E:::Y:M:V:GV

consensus       NRSGNFGGPADQFRVRINDTGANAKWIMRITGDTAPDGTYNIEVDDGAGRQGTCAVDDEE
#oth            111.11111111.1.11111.1111.1.1111.1111..1111.1111.1.11...1111
rrnAC1422       PS::S------E:V:TT:G::G:P::M:::W::VG:S::V:V:::TPS:T:-::::PI::
Hmu1730         ::T::::::::::::::E:-::G:T:::NV:H:::-::::K:G:E:::::::V:::::GV

consensus       DYAHIDLTAGLVDGAPCLALQGGSFDGRFAEGVGDEYNIAYEEGDQIKGNYSLVVRDDAP
#oth            1.1.1.1.1.1.1.1..1..11111111.11..111.1.1..1..111....1..1.111
rrnAC1422       P:::::V:G:T:Q:E:::::::::::::::H::::::::T::S:::::::::M::::ST:
Hmu1730         ::F:V::::::::::::P::S-------:G:::SEP:E:::::::EVT:::::::G:::T

consensus       ANGNLPLDSAGADPFATPAIYAANVRYRYDGANLRYEAKIRVAPGEPDAS
#oth            1.11111111111.11.1.1.1.1.1....111....11........111
rrnAC1422       ::---T::T:P:S::S:T:V:N:T::::::TS::::::::::::::::::
Hmu1730         S:::::SS:T:D::Y::::::::::T::::::K::::TT::::::::P--