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2 genomes BUD3470 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2042

 - -

Hmu0121

 - - - -

Pairwise sequence scores
Consensus score3037 rrnAC2042 Hmu0121
2799rrnAC2042 3010 2084
2322Hmu0121 2084 2706 

395 symbols
consensus       MALLEINNLTVNFYTEEGVVRAVDDLSFRINRGEKFGVVGESGAGKSVTALSLMRLIEDP
#oth            ...1.111............1......11.1...................1.1.....1.
rrnAC2042       :::::VE:::::::::::::T:::::::::::::::::::::::::::::::V:::::E:
Hmu0121         :::V:::D:::::::::::::::::::YT:E:::::::::::::::::::M:::::::::

consensus       GRIESGEIRFDGQDLLELSDERVRDIRGNDIAMIFQDAQTALNPVYTVGEQISEAIRHHL
#oth            .1....1.1.1.1..1.1.111..11...11.......................1.....
rrnAC2042       ::::::T::::::::T::::SE:::V::::V:::::::::::::::::::::::::::::
Hmu0121         :Q::::::L:K:E::::M:E::::S::::E::::::::::::::::::::::::V:::::

consensus       DYDDQAARERTIRLLDDVGIPEAEARYDDYPHEFSGGMQQRAIIAMALSCDPDLLIADEP
#oth            ..1111.1........1.....1....1..............1.........1.......
rrnAC2042       ::::T:::::::::::::::::P:::::::::::::::::::::::::::::E:::::::
Hmu0121         ::GE:E:K::::::::E::::::::::S::::::::::::::V:::::::::::::::::

consensus       TTALDVTIEAKILDRLNRLADEFDTAIQLITHDLGVIAQMCDRVMVMYAGRAVEKAPVEE
#oth            ..............1.11....1..1............11........1..1....1...
rrnAC2042       ::::::::::::::::::::::Y:::::::::::::::E:::::::::::::::::S:::
Hmu0121         ::::::::::::::Q:ED:::::::S:::::::::::::V::::::::G::P::::::::

consensus       LYYDPKHPYSVGLMSAIPRIGDRRDRLQTIPGTMPDLVDVPSGCSFHPRCPFAEEACTRK
#oth            .........1.....1......111..1..........1..1.........1...1....
rrnAC2042       :::::::::T:::::::::::::Q:::K::::::::::E::::::::::::::::V::::
Hmu0121         :::::::::::::::S::::::T:E::::::::::::::::T:::::::::Y::::::::

consensus       DPPLVDPETGDEAGGDLGDRAAACLAYTDDLDDELDYEVEVQGRDTPPDNTQPGSRSGRT
#oth            1.1.......11111111111....1..1..111...1...1111111111111111111
rrnAC2042       Q::::::::::GV:--:S::G:::::::G:::::::::::::::::::::::::::::::
Hmu0121         ::V:::::::H::S::P:EH:::::E:::::TGG:::T:::-------------------

consensus       DADPLRTDSDPVGLDTDLLDRDGNADNDTGGDQRE
#oth            111111111111111111111..11111.1.1.11
rrnAC2042       :::::::::::::::::::::::::::::::Q:DG
Hmu0121         ---------------------::EEPQI:P:::::