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2 genomes BUD3473 2 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0176

 - -

Hmu0722

 - - - -

Pairwise sequence scores
Consensus score1406 rrnAC0176 Hmu0722
1039rrnAC0176 1383 422
789Hmu0722 422 1192 

188 symbols
consensus       MRVFRRIYYAAEAPFRMEIAERSRARIQERIAALQQEHGPFPVNQTTLSLGPDAYDAAVE
#oth            1111111111111111..1111..1111.1111.1.11.11..1...1.1111..11...
rrnAC0176       ::::::::::::::::::::::::::V:::L:R:E::F:ST::D:::F:V:SE::QR:::
Hmu0722         ----------------::SVGG::DV:G:G:E::::H:::::::::::::S:::::::::

consensus       RARDGQADVHARVENDDGDVLHSDADDRRRIPRCQTQGAERPASARARDAVADAAGIACT
#oth            .111.11..111.1.11.1..1111111111.11111.1.1.11111.11.1111.11..
rrnAC0176       :S:E::V::::F:H:ES::::L::::GSWE::QG:::::::::T:VE:-V:TET::V:::
Hmu0722         ::C::F:::YV:::::::E:::VQGE::::V:::-VG:S:T:L:E:::::::::T::D::

consensus       IRDAVRATIAGVRNAADPDAETVYRLLILFDAEIDGTAAESSGAETTGQAEAGIRWADAG
#oth            .111..1..1....11.1........1111..111111111111111.11.1111.1111
rrnAC0176       :::::::::C::::E:::::::::::S:V:::::KS::::::::::::E:::S:::D:::
Hmu0722         :DGI::V::::::::E:T:::::::::V:V::VY::-----------::T:R:V-::TES

consensus       DIAVAELV
#oth            1.111.1.
rrnAC0176       ::::::::
Hmu0722         E:--P:F: